Protein

View in Explore
Genbank accession
WAK44640.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MGQKLYYNFSSGSLPSDFTLLSSDPLFKNGRLGNGRSSATLVASFPTHSTEGYLRFQVYGNHKQNGFTGLRFRRQNGVGHWRVGIHASSQELRLQRVVDGGDTTTAGTFTIPSYSKGTTYSVAITYIGSVFKVFLNGDLENPVIDVDVSSEASGGVFDNDFYGATDAGLRVETYDSYIDSIGFGGEPPVIELTGDNPTEVVAGQAYVEQGYTALDDMLGDLSSDVVATVSESLDLSTEGLYENAVTYTLTNIFGIDATPVTRDVLVRPANYIPVLTLPENIIVASGASAEIIAEVEDLDVDDTFTYQWVQVSGAGIPLQSSTSDRIIFTSPVVDTATDFEFRCTVTDSAGATDTKNFILSVKPDTAAQRLSSKDHTINIQQSKIKLKLENALTGFTSNMVSLIDPDTGAKIVHDVHELEDGAVDITVDTLRGLKYTGSVWAGTDFPPSEGWLVAGASVGEVKCFANDMVRIYSNFLPDNAVKVGSMNGISGSFYSRLGAYCSLSSGKFYYHPQGKFDYLDPGETVTDYIDYETSDGQQLEIPVIVHASREVGANLAGTSSYITSAAFEAGKIYEVAVTVTGRSVGGVVPQFDGPTGATGKYSLVKNARDVWHIKCPEGATQLEIVKLDGFDGDIEQLHVREVFRPELPTEPRKLALRDKEGVPVVQAILSPLYRAVDGEAPDKVWENEELKYNSEFGIRDEDNTGKFSVIDTFSVGKRGAISLKGGTYCYVDNCDVKGGYTGSNEKYTVGFIFQDSGSKIMKTQTMVNCFVDIMHPSHRGDYNVGPNSDPIVLNSTSGSLGFIQQAYISNCWLTNGGDGIIDSKMVTFTNYVDAVNGNRTLRSHNGTVHVTANTTLARTSEFGNQCLIHMKARDSRVTLFNVWVINATGAEKTRLVDREDLDMSNVVAQDNGRSEALDLIHIAKTIPSMTDNVLFAWDVLEMQYRVTGDSEWLDLGTIEHDHAGAITWDLDALPSNTYDFRCRAMNGLNYSVYTQLDAQEVTHATA
Physico‐chemical
properties
protein length:1006 AA
molecular weight: 109425,45720 Da
isoelectric point:4,67708
aromaticity:0,09344
hydropathy:-0,20507

Domains

Domains [InterPro]
G3DSA:2.60.120.560
RBD
27–181
G3DSA:2.60.120.560 IPR013783 IPR013783 DC_1298
DC_0400
STR
49–360
DC_0400
IPR032179
STR
190–266
IPR032179
WAK44640.1
1 1006
Architecture
RBD
STR
STR
RBD 27-48 | STR 49-362 | STR 900-1006
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAK44640.1
1 1006
Domain Start End Length (AA) Confidence
N-terminal 1 135 135 0,0785
Central domain 136 350 216 0,2174
C-terminal 351 1006 655 0,0906
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-135
Central
136-350
C-terminal
351-1006

Taxonomy

  Name Taxonomy ID Lineage
Phage Alteromonas phage vB_AmeP_PT11-V19
[NCBI] 		2996182 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Alteromonas mediterranea
[NCBI] 		314275 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAK44640.1 [NCBI]
Genbank nucleotide accession
OP751378 [NCBI]
CDS location
range 13607 -> 16627
strand +
CDS
ATGGGTCAGAAGTTGTATTATAATTTTAGTAGCGGATCACTTCCTTCCGACTTTACGTTGTTAAGTAGTGACCCTCTTTTTAAAAATGGTCGTTTAGGTAATGGTCGTTCATCGGCTACGCTTGTTGCGTCTTTTCCTACACACTCAACGGAAGGCTATTTAAGGTTTCAAGTCTACGGCAACCACAAACAGAACGGGTTTACAGGTCTTAGATTCCGTAGGCAAAATGGAGTGGGCCACTGGCGCGTAGGTATTCACGCGAGCAGTCAAGAACTACGGTTACAGCGCGTCGTAGATGGTGGTGATACAACAACTGCTGGTACTTTCACTATTCCAAGTTACAGTAAAGGTACTACGTATAGTGTTGCAATAACCTACATCGGTAGCGTGTTTAAAGTCTTTTTAAATGGCGATTTAGAAAACCCTGTTATTGATGTTGATGTGTCGTCTGAAGCATCAGGCGGAGTTTTTGATAACGACTTCTACGGTGCAACCGACGCGGGCCTTAGAGTAGAGACTTACGACTCGTACATTGACAGTATCGGTTTTGGTGGCGAACCCCCTGTTATAGAGTTAACCGGTGATAACCCGACGGAAGTGGTCGCAGGGCAAGCGTATGTAGAGCAAGGCTACACAGCGTTAGATGATATGCTAGGCGATCTGTCGTCTGACGTCGTAGCTACTGTATCGGAGTCTTTAGACTTGAGTACAGAGGGTTTGTATGAAAACGCTGTTACGTACACATTAACCAACATATTTGGTATAGACGCGACACCTGTAACTCGTGATGTTCTTGTTCGCCCTGCGAACTATATACCGGTACTAACACTACCCGAGAATATCATTGTGGCTTCTGGTGCATCGGCAGAGATTATTGCTGAAGTAGAAGACCTTGATGTAGACGACACTTTCACTTACCAATGGGTTCAGGTCTCAGGCGCGGGTATTCCGTTACAGAGTTCAACGTCGGACCGAATCATATTCACAAGCCCTGTCGTTGATACGGCTACGGACTTCGAATTTCGCTGTACGGTTACTGACTCAGCAGGCGCAACGGACACAAAGAACTTCATCCTATCGGTGAAGCCTGATACGGCTGCACAGCGTCTTAGCAGTAAAGACCACACAATCAACATCCAGCAGTCGAAGATTAAACTCAAACTGGAAAACGCCCTGACAGGTTTCACTAGCAATATGGTCTCGTTGATAGACCCTGATACTGGGGCGAAGATTGTGCATGATGTGCATGAGCTTGAAGACGGGGCCGTGGATATTACGGTTGATACGCTTCGAGGGCTAAAGTACACAGGTTCTGTATGGGCGGGAACGGACTTTCCACCGTCTGAAGGTTGGTTAGTCGCAGGGGCGTCAGTTGGCGAAGTTAAGTGCTTTGCTAACGATATGGTTCGTATCTATTCTAACTTCCTCCCTGATAATGCGGTGAAAGTTGGAAGTATGAACGGCATTAGCGGCTCGTTCTATTCCAGACTAGGAGCGTACTGTAGCCTATCCTCGGGTAAGTTCTACTATCACCCTCAGGGTAAGTTTGATTATCTCGACCCGGGCGAAACAGTAACGGATTACATTGACTACGAAACGTCTGATGGTCAGCAGCTAGAAATCCCTGTTATCGTCCACGCCAGCCGTGAGGTTGGGGCTAACCTAGCAGGTACAAGTTCTTACATAACGTCGGCCGCTTTTGAGGCGGGGAAAATTTACGAGGTCGCCGTTACCGTAACAGGCCGTTCAGTAGGGGGCGTTGTTCCGCAGTTTGACGGGCCAACGGGTGCAACGGGCAAATACTCACTGGTCAAAAATGCACGAGACGTGTGGCATATCAAGTGCCCTGAAGGTGCAACCCAGCTAGAGATAGTTAAGCTTGACGGTTTCGATGGTGACATTGAGCAGCTTCACGTACGCGAGGTGTTTAGGCCCGAACTGCCAACCGAACCCCGCAAATTGGCGCTTAGGGACAAAGAAGGTGTTCCTGTAGTTCAAGCTATCTTATCACCTCTGTACCGCGCCGTAGACGGTGAAGCACCTGATAAAGTGTGGGAGAACGAGGAACTTAAGTACAATAGTGAGTTCGGCATTCGAGACGAAGATAACACGGGTAAATTCTCTGTCATTGATACTTTCTCCGTCGGTAAGCGAGGTGCAATCTCACTAAAAGGTGGTACGTACTGCTACGTAGATAACTGTGACGTTAAAGGTGGGTATACAGGGTCAAACGAGAAATATACGGTAGGCTTCATCTTCCAAGACTCGGGCAGCAAAATAATGAAGACGCAGACTATGGTTAACTGCTTCGTTGATATTATGCACCCGTCGCACAGAGGCGATTACAACGTAGGGCCAAACAGCGACCCTATTGTTCTTAACTCGACCTCAGGCTCACTGGGCTTTATCCAGCAAGCGTACATATCAAACTGTTGGCTTACAAATGGCGGCGATGGGATTATCGATTCCAAGATGGTCACTTTCACTAACTACGTGGACGCTGTGAATGGCAACCGTACATTACGCTCCCACAACGGCACTGTGCATGTGACGGCGAATACCACGCTGGCGCGTACTTCGGAATTTGGCAACCAATGTCTAATCCACATGAAGGCGCGAGATAGCCGCGTAACGCTGTTCAACGTATGGGTTATAAACGCTACGGGCGCGGAAAAAACACGTCTAGTTGACAGAGAAGACCTAGACATGTCTAACGTCGTGGCGCAGGACAATGGCCGCTCAGAAGCGCTTGACCTCATCCACATCGCCAAGACCATCCCTTCTATGACAGACAACGTACTGTTCGCGTGGGATGTTCTGGAAATGCAGTACCGTGTAACGGGGGATAGCGAGTGGTTGGATTTGGGTACAATTGAGCATGACCATGCTGGTGCTATCACATGGGATCTCGATGCTCTACCGTCAAACACCTACGACTTCCGTTGTCGTGCAATGAACGGGCTTAACTACAGTGTTTATACCCAACTTGACGCACAAGAGGTAACACATGCCACAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
beb68750ea1fa0aaf4a5043d71c61df36cdc5a181c05eb940b9cc74389867b2f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2755
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Structural and functional assessment of homologous host recognition modules used by distant Alteromonas phage families Gonzalez-Serrano,R., Rosselli,R., Roda-Garcia,J.J., Martin-Cuadrado,A.B., Rodriguez-Valera,F. and Dunne,M. 2023-03-07 — GenBank