Protein

View in Explore
Genbank accession
YP_010669922.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MANKDFGVKKIELIGSSGTPNLTSPTNLNLNASTVAISTDVTIGGKVQSNVIVGTGYSVGIGSTLPRQALDVGGTIRATGFVKSDGSAIGAGDTANIVTGIITATTYYGDGSNLSGISNVSIGDTAPSPATDNTLWWSSALAKGFIRYNDGNSSQWVEFSPSGGGGSGNIVGLSTAGNSYFTNIDVNNQSSLTNLNVSGFSTLTNLNVSGVSTFGSNLEIYVDGSDSVIREGGAGNLEIKANGIQLQEYDGTVFADFNGGPSGWQRFYHDGSNLKLEVNANGIDVTGHTETDTLNASGVSTFSSGSNSVVQIGLSTSLIVPTGIIQVGRTIEGTTLIKGGQINLTGPNSSDLNSTYYSNIRLNRIGGNFRYDLEFHSNGYSSGDIGDFIFYRRRTSYGRTERMRLSGETGNLTVTGSGSFNGLDVTGHTETDTLNVSGVSTTSSLNVGTAYSVSSGLGTFTASAGVSTNIASFNASDYKVVEYKLWIQHANGIQSQKVIIMHDDNDVYTQESDIFYSNTLLIGAGATISGGTVSLALTPESGVNGITTYRYSRESLV
Physico‐chemical
properties
protein length:557 AA
molecular weight: 57948,70400 Da
isoelectric point:4,75284
aromaticity:0,08079
hydropathy:-0,13932

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Uroviricota > Caudoviricetes > Pantevenvirales > Zhoulongquanvirus > Zhoulongquanvirus esscess
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669922.1 [NCBI]
Genbank nucleotide accession
NC_070962.1 [NCBI]
CDS location
range 193829 -> 195502
strand +
CDS
ATGGCCAATAAGGATTTTGGTGTAAAGAAGATAGAACTAATTGGTTCATCTGGCACACCCAATTTAACTAGTCCAACTAATCTTAATCTAAACGCAAGCACTGTTGCGATTAGTACGGATGTTACGATTGGAGGTAAAGTTCAATCAAATGTTATTGTTGGGACTGGATATTCTGTAGGTATTGGTAGCACTCTTCCACGGCAAGCACTTGATGTTGGTGGAACAATTCGTGCTACTGGTTTTGTAAAGTCTGATGGAAGTGCTATTGGTGCTGGAGATACTGCAAATATTGTTACTGGTATTATTACAGCAACAACATATTATGGAGATGGATCCAATCTAAGTGGTATTTCTAATGTATCTATTGGAGATACAGCACCATCCCCAGCAACTGATAATACTTTATGGTGGAGTAGTGCTCTTGCTAAGGGATTTATCCGTTATAATGATGGAAACTCTTCACAATGGGTAGAATTCTCACCATCTGGTGGTGGAGGATCAGGTAATATTGTAGGTCTTTCTACTGCAGGAAATTCATACTTCACAAATATTGATGTTAATAATCAATCAAGTTTAACCAATCTAAATGTATCTGGTTTTTCTACTTTAACCAATCTAAATGTATCTGGTGTTTCAACATTTGGTTCTAATTTAGAAATTTATGTTGATGGTTCTGATAGTGTAATACGAGAAGGTGGTGCAGGAAATCTTGAAATAAAAGCTAACGGTATTCAGTTACAAGAATATGATGGGACGGTTTTTGCAGACTTTAATGGAGGACCTTCTGGATGGCAAAGATTTTACCATGATGGTTCTAATTTAAAATTAGAAGTAAATGCAAATGGCATTGATGTAACAGGTCATACTGAGACTGATACTTTAAATGCCTCTGGTGTATCTACGTTCTCTAGCGGTAGTAATTCTGTTGTACAAATTGGTTTATCAACATCGTTAATAGTTCCTACTGGTATAATTCAAGTTGGAAGAACTATTGAAGGCACAACACTTATTAAAGGTGGACAGATTAATTTAACTGGTCCAAATTCTAGTGATTTAAACTCTACTTACTATTCAAACATTAGATTGAATAGAATTGGTGGTAATTTTAGATATGACTTAGAGTTCCATTCTAATGGTTATTCTTCTGGTGATATTGGTGACTTTATCTTCTATAGAAGAAGAACAAGTTACGGAAGAACTGAAAGAATGAGGTTGAGTGGTGAAACTGGAAATCTCACTGTAACTGGTAGTGGTAGTTTTAATGGACTGGATGTAACAGGTCATACTGAAACTGATACTTTAAATGTTTCTGGTGTTTCTACTACATCATCATTAAATGTTGGAACTGCCTATAGTGTTTCTTCTGGTTTAGGAACTTTCACTGCTTCTGCTGGAGTATCAACAAATATAGCATCATTTAATGCTTCAGACTACAAGGTTGTTGAATATAAATTGTGGATACAACATGCAAATGGTATTCAATCTCAAAAAGTAATCATTATGCACGATGATAATGATGTATATACCCAAGAGTCTGACATTTTCTATAGCAATACTCTTCTAATAGGTGCTGGTGCAACTATTTCTGGTGGAACTGTAAGTCTTGCCTTAACTCCAGAATCTGGAGTAAATGGAATTACAACTTACAGATATAGTAGAGAATCATTAGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
29cef7c59277bf1aa2904fe1e9e72db8cf502ee48892c7df64b59bdd4ad1d871
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6263
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank