Protein

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Genbank accession
YP_008129881.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYPISPLYAALLRQPDREFKVKVNVDGTEYDNSVIADFVIDNSVTSLDGFEVGTAIPSTLTITLRTNYEIQPNAKMIPYLALSTTGLTWEQTDIPWNEMNVPWDGTGTAWLPLGEFYVDKREKINGVWTFTCLDKLVFADVAYISTLNYPTTMKAVWDEICNRLGWTYDLSVQINPSYMVQVGPAGFTMRQVLGYIAGANAASVIVGKDGVIKFKRFTTAEAPVFNMGSSDYIRAVQTNPIKTYSRVVVTYDTEDQLTFEAGSGDENHTLNLENPLMTQAMVNNLQASLNGFAYLPLSMDARGFPQLEHGDIIGFEQDEHTTWLETVTSWEDTNIPWDGIMKYKTTILRQSFSFRGGLKMTIESPSVSEQQSEFVVEGSLTQQVNKIDKTAIKEGKKYYGATITRSEGLVIERDDHLSKAVFNSDELSFYADGNRALWFDLPSRKFKFEGTLEGVDGIFTGDLQAVGGTFSGTLQGVDGTFSGTVQAGRIEGGEIVGSYIEGADILGSSIRTAQNGERIELDPFGFRFYDDFGARRVELGTNPSAGISGHTYYNNSGQSEGLIYATNGELHLIGNNNLRLGTNFGTTFIQGSLFDCVANMVQFSGVVDFSNATVIGL
Physico‐chemical
properties
protein length:617 AA
molecular weight: 68039,40040 Da
isoelectric point:4,58710
aromaticity:0,11183
hydropathy:-0,18282

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008129881.1
1 617
Domain Start End Length (AA) Confidence
N-terminal 1 307 307 0,8165
Central domain 308 520 214 0,1302
C-terminal 521 617 96 0,6240
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-307
Central
308-520
C-terminal
521-617

Taxonomy

  Name Taxonomy ID Lineage
Phage Paenibacillus phage PG1
[NCBI] 		754053 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Paenibacillus glucanolyticus
[NCBI] 		59843 Bacteria > Firmicutes > Bacilli > Bacillales > Paenibacillaceae > Paenibacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008129881.1 [NCBI]
Genbank nucleotide accession
NC_021558 [NCBI]
CDS location
range 8331 -> 10184
strand +
CDS
ATGTATCCAATATCGCCGCTTTATGCGGCTTTACTACGGCAACCGGATCGGGAATTCAAAGTAAAAGTAAATGTTGATGGAACTGAGTATGATAATTCGGTCATTGCTGATTTTGTAATAGATAATAGTGTGACTTCTCTAGATGGGTTTGAGGTGGGAACTGCAATACCTTCCACCTTAACCATCACATTAAGGACAAACTACGAGATACAACCTAATGCCAAAATGATTCCATACCTCGCCCTTTCAACTACCGGCCTAACCTGGGAACAAACAGATATACCGTGGAATGAAATGAATGTTCCTTGGGATGGTACTGGCACAGCATGGTTACCGCTTGGCGAATTCTACGTTGACAAGCGCGAAAAGATCAATGGAGTCTGGACATTCACGTGTTTGGATAAATTGGTATTTGCAGATGTCGCCTATATCTCTACGTTGAATTATCCAACCACCATGAAGGCAGTATGGGACGAAATATGCAACCGGTTAGGGTGGACTTATGATTTAAGTGTGCAAATAAACCCTAGTTATATGGTTCAGGTAGGACCAGCCGGTTTTACCATGCGTCAAGTGTTGGGTTACATCGCCGGGGCAAATGCAGCAAGTGTGATTGTCGGTAAGGATGGAGTCATTAAGTTCAAACGATTCACAACAGCGGAGGCACCGGTCTTTAATATGGGATCCTCGGACTATATCCGGGCGGTTCAAACTAACCCTATCAAGACTTATTCCAGAGTCGTAGTAACTTATGACACAGAAGATCAATTGACCTTTGAAGCTGGTTCGGGAGACGAAAACCATACACTCAACCTAGAAAACCCGTTGATGACTCAAGCCATGGTGAATAATCTTCAAGCATCCTTGAATGGATTCGCTTATTTGCCGCTCTCTATGGACGCCAGAGGCTTTCCGCAACTTGAACACGGGGATATCATAGGGTTTGAGCAAGACGAGCATACAACGTGGTTAGAGACCGTCACATCATGGGAGGATACGAATATCCCGTGGGATGGCATCATGAAATACAAGACCACCATTTTACGACAGTCTTTCAGTTTCAGGGGCGGTCTGAAGATGACCATCGAATCCCCTTCAGTGTCGGAGCAACAAAGTGAGTTTGTGGTTGAAGGATCGTTGACCCAGCAGGTTAACAAGATCGATAAGACCGCAATTAAAGAAGGCAAGAAATATTATGGCGCTACTATCACGCGCAGCGAAGGTTTAGTAATTGAACGTGATGACCATTTATCAAAGGCTGTATTTAACTCGGATGAACTGAGTTTCTACGCCGATGGAAATAGAGCGCTATGGTTTGATTTGCCTAGCCGAAAATTCAAGTTTGAAGGAACACTTGAAGGTGTAGACGGAATATTTACCGGAGACCTTCAGGCGGTAGGTGGTACGTTTTCAGGAACGCTACAAGGTGTTGACGGTACATTTAGCGGAACCGTACAAGCTGGACGTATTGAGGGTGGAGAAATTGTTGGTTCTTATATTGAAGGGGCTGATATTCTAGGTAGTTCCATCAGAACTGCCCAAAATGGCGAACGCATTGAATTGGACCCGTTCGGTTTCAGGTTCTATGATGATTTCGGCGCTAGACGCGTTGAACTCGGAACTAACCCATCTGCAGGAATATCAGGACATACTTATTACAACAATAGCGGTCAGTCGGAAGGACTTATCTATGCTACGAATGGGGAACTGCATTTAATCGGAAACAATAACCTTAGGCTAGGAACAAATTTTGGGACAACGTTCATTCAAGGGAGTTTGTTTGATTGCGTAGCTAATATGGTTCAATTTAGTGGCGTTGTGGATTTTTCAAATGCAACTGTTATAGGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e16fc41aa7735c3f520dc4fbc554119145612b175eedb1211f8cfc14f358aee1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7641
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Paenibacillus phage PG1 Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank