Protein

View in Explore

Genbank accession

WPK35761.1 [GenBank]

Protein name

side tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,55

Evidence RBPdetect2

Probability 0,96

Protein sequence

MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTQNGDYLQNGAYNLNGNQFVYAGKYIEFLPKTAGNGAWANQHTNKAPIFTDLSSTTSTSEYHPLIKQRYKDGTFSVGTLVSEGSFRVHYIDSTAPDNSKHWAFNRNGNFIVDSGSIEVRAGNISASGNINSANGIVSAPQVNTKTIVLDTKAFGQYDSQSLVQYVYPGTGEENGINYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNSLTTKLMGLRNDGAMVLRRSLAIGTITTDENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKALFGRSEDQGGTWTMPGTNAAFLSVQTQADNNNAGDGRTHIGYNSGGKMSHYFRGTGQMNINTQQGMEINPGILKLVTGANNVMFYADGGITSTKQLSIYNGVYLAANNSTAGLTFAPTTTIDGTKQILWEGGKRAGQNKSYVTVKAWGNSFNASGDRNRETVFEVADGQGYYFYSQRVAPSGSETTGPVVTQFAGAVNARGSIITDGSFKVNGLSTLVGNVTMSNGLNLTGGSSITGQVKIGGTADALRIWNAEYGAIFRRSEDKLYIIPTPQNAGETGGISNLRPFYIALSNGKVSMDHDVDIGGGRFKVETSGTTSGQRITVNTASDAIRINAPTQESSNFIQGRKADVTKWYLGIGDGGNIVRMHSYTYSHGIALNSDTVDIAKPLRIGSTQIGTDGNITGGSSNFANLNTTLERRVKVGTWSGSSTAGWYKFATVTMPQSVSTVQFKIIGGNGYNANSPEQATITEVVLRTSNNNPKGINATLWGRTGNGFTNIATINTSGDDYDVYLYAGTYADKLIVEYDATENTRYISVIGLNGGYQTPVTELPAGHLVGQVYMMYSDAQIPYPVGAPIPWPSDSVPDGFALMEGQTFDKSAYPKLAIAYPTGTIPDMRGQTIKGKPSGRAVLSAEADGVKAHSHSASASSTDLGTKTTSSFDYGTKTTSSFDYGTKTSNNTGAHTHSLSGSTNTAGAHSHTSALYAGDRNSPGGSSARGSAGGGNTLGTSSSGAHSHSISGTAASAGAHAHTVGIGAHTHTVGIGAHTHSVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	1160 AA
molecular weight:	122502,81750 Da
isoelectric point:	8,88241
aromaticity:	0,08448
hydropathy:	-0,36983

Domains

Domains [InterPro]

DC_0538
STR
1–889

DC_0538 SSF88874 SSF88874

G3DSA:6.20.80.10
STR
686–745

G3DSA:6.20.80.10 DC_0310

IPR048388
ATT
688–762

IPR048388 IPR051934

IPR037053
ATT
927–979

IPR037053 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003

IPR011083
ATT
931–978

IPR011083

WPK35761.1

1 1160

Architecture

STR

ATT

STR

ATT

STR

STR 1-687 | ATT 688-762 | STR 763-926 | ATT 927-979 | STR 980-1160

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0538	STR	DC_0538	1	889	Novel HMM	DC_0538	Central	Low	Positional only	380 proteins / 380 hits
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	686	745	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	688	762	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
DC_0310	STR	DC_0310	799	1160	Novel HMM	DC_0310	Central	Low	Positional only	71 proteins / 71 hits
IPR051934	Unmapped	-	810	1160	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	923	1050	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	927	979	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	931	978	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR005003	Unmapped	-	993	1006	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	1035	1048	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	1049	1059	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
SSF88874	STR	SSF88874	1054	1159	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR005003	Unmapped	-	1086	1099	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-
IPR005003	Unmapped	-	1110	1121	InterPro	Bacteriophage lambda, Tail fiber protein, repeat-1	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

WPK35761.1

1 1160

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	763	763	0,0401
Central domain	764	962	200	0,5732
C-terminal	963	1160	197	0,8858

Note: Constraints were applied during segmentation.
Fixed 712 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-763

Central
764-962

C-terminal
963-1160

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage AV117 [NCBI]	3077262	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

WPK35761.1 [NCBI]

Genbank nucleotide accession

OR352947.1 [NCBI]

CDS location

range 57560 -> 61042
strand +

CDS

ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGGATATTAACGGTAATGTAACTCAAAATGGAGATTATTTACAGAACGGTGCATATAATCTCAATGGAAACCAGTTTGTTTATGCAGGAAAGTATATTGAATTCTTGCCAAAAACTGCTGGAAATGGCGCTTGGGCTAACCAACACACAAATAAAGCCCCTATCTTTACAGATTTGAGTTCAACTACTTCAACTTCTGAATACCACCCTTTGATTAAGCAACGTTATAAAGACGGTACTTTTTCAGTAGGTACATTAGTAAGCGAAGGCTCATTTAGAGTTCATTATATTGATTCTACAGCTCCAGACAATTCTAAACACTGGGCCTTTAACCGTAATGGTAATTTTATTGTAGATTCTGGTAGTATTGAGGTCCGCGCAGGTAATATTTCTGCGTCAGGCAATATTAACTCCGCTAATGGTATAGTTTCTGCTCCACAAGTTAATACGAAAACCATTGTTTTAGACACAAAAGCATTCGGACAATATGATTCACAATCATTAGTTCAATATGTTTATCCTGGAACAGGTGAAGAAAATGGTATAAACTATCTTCGTAAAGTTCGAGCTAAATCAGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAATGATGAAATTTCTTGGTGGACCGGAAACTCACTTACCACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACCACTGACGAAAATACTAACAACTACGGTTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTGGGCGATGCTGCAACCGGTTTAAAATATATTAAGCAAGGTGTTTATGATTTAGTAGGTAATTGGAATTCTGTTGCTTCTATTACTCCTGATAGTTTCCGTAGTACTCGTAAAGCATTATTTGGACGTTCAGAAGACCAAGGCGGAACCTGGACAATGCCTGGCACTAATGCCGCTTTCTTGTCTGTTCAAACACAAGCTGATAATAACAATGCTGGAGACGGCCGGACACATATTGGTTATAACTCCGGTGGAAAAATGTCGCACTATTTCCGTGGTACAGGTCAGATGAATATCAATACCCAACAAGGTATGGAAATTAACCCGGGTATTTTGAAATTGGTAACCGGTGCAAATAATGTGATGTTTTATGCTGATGGCGGTATTACATCCACTAAGCAGCTTTCAATATATAATGGTGTATATTTAGCAGCTAATAATTCTACTGCTGGGCTAACATTCGCTCCAACTACTACAATTGATGGCACTAAGCAAATTTTGTGGGAAGGTGGTAAGCGCGCTGGACAGAATAAAAGCTATGTAACTGTTAAAGCGTGGGGTAATTCATTTAACGCATCTGGCGATCGTAATCGCGAAACAGTTTTTGAAGTAGCTGACGGACAAGGTTATTATTTTTATTCCCAACGCGTAGCCCCAAGCGGCTCCGAAACTACTGGTCCTGTTGTAACCCAGTTTGCTGGAGCTGTTAATGCTAGAGGAAGTATTATTACTGACGGAAGTTTTAAAGTTAATGGATTAAGCACTTTAGTCGGTAATGTTACAATGAGCAATGGTCTTAATTTAACTGGGGGTTCTTCTATTACAGGCCAAGTAAAAATTGGTGGAACTGCCGATGCATTAAGAATTTGGAATGCTGAATATGGTGCAATTTTCCGTCGTTCTGAAGATAAGCTTTATATTATTCCAACTCCGCAGAATGCTGGTGAAACAGGCGGTATTTCTAATTTACGTCCATTCTATATTGCATTAAGTAATGGTAAAGTCAGCATGGATCATGATGTTGATATCGGTGGTGGAAGATTTAAAGTAGAAACTAGTGGAACAACATCGGGGCAACGTATTACAGTTAATACTGCCTCCGATGCTATTAGAATAAATGCTCCAACACAAGAGTCTTCTAACTTCATCCAAGGACGTAAAGCAGATGTCACAAAATGGTATTTGGGTATTGGCGATGGCGGCAACATCGTTCGTATGCACAGTTACACCTATTCCCATGGTATTGCATTAAACTCTGATACGGTTGATATAGCTAAACCTCTTAGAATAGGTTCAACCCAGATTGGAACCGATGGTAACATCACAGGTGGTTCTAGTAATTTTGCTAACCTGAACACAACTTTAGAACGTAGAGTTAAGGTCGGAACTTGGTCCGGTAGTTCAACTGCAGGATGGTATAAATTTGCTACTGTAACTATGCCACAATCAGTTTCTACCGTCCAATTTAAGATTATAGGTGGTAATGGATATAATGCCAATTCACCAGAACAGGCTACAATTACTGAAGTAGTTCTTCGTACCAGTAATAACAATCCTAAAGGTATTAACGCCACTTTATGGGGGCGCACGGGTAATGGATTTACTAATATAGCAACAATTAATACCTCCGGTGATGATTATGACGTTTATCTGTATGCTGGGACTTATGCAGACAAACTTATAGTTGAATATGACGCCACAGAAAATACACGTTATATTTCGGTAATTGGTCTTAATGGTGGATATCAAACACCAGTAACAGAATTACCCGCTGGTCATCTCGTTGGTCAAGTGTATATGATGTATTCTGATGCTCAAATACCTTATCCGGTCGGTGCTCCGATTCCATGGCCAAGTGATTCAGTTCCTGACGGGTTTGCTTTAATGGAAGGTCAGACTTTTGATAAGTCTGCATATCCTAAGCTCGCTATCGCATATCCTACAGGTACTATTCCTGATATGCGTGGACAAACTATCAAGGGTAAACCAAGTGGTCGTGCTGTTTTGAGCGCTGAGGCAGATGGTGTTAAGGCTCATAGTCATAGTGCAAGTGCATCAAGCACAGATTTAGGTACTAAAACCACATCAAGCTTTGACTATGGTACTAAGACGACAAGTAGTTTCGACTATGGTACTAAGACCAGTAATAATACTGGTGCTCATACGCATAGTTTGAGCGGTTCCACAAACACCGCCGGTGCGCACAGCCACACAAGCGCTCTTTATGCGGGCGATAGAAACTCTCCTGGTGGTAGTTCTGCAAGAGGATCCGCCGGTGGTGGTAATACGCTTGGAACTTCTTCTTCTGGGGCACATTCGCACTCTATATCTGGTACTGCTGCAAGCGCAGGCGCTCACGCACATACTGTTGGTATTGGTGCTCATACCCATACAGTTGGTATTGGTGCTCACACCCATTCAGTAGCAATTGGTTCACATGGGCATACAATAACTGTAAATAGTACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Tertiary structure

PDB ID

f108d6ffbc1170c1062a994e132ecdea9e454fb67a51a6522dba225c16af6833

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,5078

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli	Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L.	2023	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature