Protein

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Genbank accession
AKI28627.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTVNPAPWIEIDGDRITCQPDPTRLVILDDIVIDWGRDHPLADRGVPAAQFRLWDPTGQLLAQAGTAVDMGSTSQTLGRSVVIGWTVGTTTRVIFRGTVSGFDVRRDNKRRGWLVEGTATDRTTDLGSGKLADNVATWPAETAIVRANRLKAAIADANIDITQVYFEPDAVSWEMGLTKVADKNVLQLLDEFYASFGLTWDYRPDENVTRPAPMRSRYDARFYRLLYRIPGTGDYTICSPPETQTGFGDDAATYVSTVVSGCAVSIEGAMNVDRRDRINRVVITYLKANGVEQETSGGWGSSSLTNPRITKVSTWLNLDAPNNGHTEKIYRNQWSQVASSYVPRMPRVIWDTDHFLGVEQAFTLTRCSQSWSTVSITSNPYAAALKVPSEFHIIGGTVRYFDGRWTVAMVPAWHPNLRTRVATTWVDLRTGNPVWASLSWNSPAARPAADIAWSDFMNIAVTNQPNPAQEVQ
Physico‐chemical
properties
protein length:472 AA
molecular weight: 52349,16480 Da
isoelectric point:5,83665
aromaticity:0,09534
hydropathy:-0,29174

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKI28627.1
1 472
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,5483
Central domain 191 389 200 0,0996
C-terminal 390 472 82 0,4273
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-389
C-terminal
390-472

Taxonomy

  Name Taxonomy ID Lineage
Phage Gordonia phage GMA5
[NCBI] 		1647472 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Gordonia malaquae
[NCBI] 		410332 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKI28627.1 [NCBI]
Genbank nucleotide accession
KR053198 [NCBI]
CDS location
range 9999 -> 11417
strand +
CDS
ATGACCGTCAACCCCGCCCCCTGGATCGAGATTGACGGCGACCGCATCACCTGCCAACCCGACCCGACACGCCTGGTCATCCTCGACGACATCGTGATCGACTGGGGCCGCGACCACCCGCTCGCCGATCGCGGAGTCCCTGCAGCTCAGTTCCGACTTTGGGACCCCACCGGCCAACTGCTCGCGCAGGCTGGCACCGCCGTCGACATGGGATCGACCTCACAGACACTCGGAAGGTCAGTCGTCATCGGATGGACTGTCGGCACGACGACACGGGTCATATTCCGAGGAACAGTTTCCGGCTTCGATGTCCGGCGCGACAACAAGCGCCGAGGCTGGCTCGTCGAGGGCACGGCGACCGACAGGACGACCGACCTCGGAAGCGGCAAGCTCGCCGACAACGTCGCCACCTGGCCGGCCGAAACTGCGATTGTCCGAGCCAACCGGCTCAAAGCGGCGATCGCCGACGCAAATATAGACATCACCCAGGTCTACTTTGAACCCGACGCGGTGAGCTGGGAGATGGGGCTTACCAAGGTCGCCGACAAAAACGTCCTGCAACTGCTCGATGAGTTCTACGCATCATTCGGTCTTACCTGGGACTACCGGCCCGACGAGAATGTAACTCGCCCTGCTCCGATGCGCTCGCGCTACGATGCCCGATTCTACCGGCTCTTATACCGCATCCCTGGAACAGGGGACTACACGATATGCAGTCCGCCGGAAACGCAAACCGGATTCGGCGACGACGCCGCGACGTACGTCTCGACTGTTGTATCAGGTTGCGCCGTGTCGATCGAGGGGGCAATGAACGTCGATCGACGCGACAGAATCAATCGCGTCGTGATCACGTACCTGAAAGCGAACGGCGTCGAACAGGAAACATCGGGCGGATGGGGTTCGAGTAGCCTCACGAACCCGCGCATCACAAAAGTGTCCACCTGGCTCAATCTCGATGCTCCGAACAACGGACACACCGAGAAGATATACCGCAACCAGTGGAGTCAGGTTGCGTCGTCATACGTACCTCGAATGCCTCGCGTGATCTGGGACACCGACCATTTCCTTGGCGTCGAGCAGGCATTCACCCTGACCCGATGCTCTCAGTCATGGTCCACGGTCTCTATCACCTCTAACCCGTATGCCGCCGCATTAAAGGTGCCGAGTGAGTTTCACATCATCGGCGGAACTGTCCGCTACTTCGACGGCCGGTGGACCGTTGCCATGGTTCCCGCCTGGCATCCCAATCTTCGGACTCGCGTCGCCACTACGTGGGTCGATCTACGCACCGGTAACCCGGTATGGGCGAGCTTGTCGTGGAACTCCCCGGCGGCGCGACCCGCAGCCGACATCGCATGGTCGGACTTCATGAACATCGCCGTCACCAATCAGCCGAACCCCGCACAGGAGGTGCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f50f2f04ba9c9b55a11bd8f0d5affb53f8f623d455b1a4986b9980d636b21dea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6359
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lysis to Kill: Evaluation of the Lytic Abilities, and Genomics of Nine Bacteriophages Infective for Gordonia spp. and Their Potential Use in Activated Sludge Foam Biocontrol Dyson,Z.A., Tucci,J., Seviour,R.J. and Petrovski,S. 2015 26241321 GenBank