Protein

View in Explore
Genbank accession
YP_009097896.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDVMNQTKSFVTSSVVDAKDDINRAVNARIAGARFIPKAFANADDLKKAYPKGQDGIFVVADTGHMWLFVNGDWKDCGVYQTPVQKNQTFTFQPSRDGFPNYDTATRKLDFRCITDKAQVTTPSGDAYRFPQHTVVDVNWEFTTGVIIFDTNTLSVISQNPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDRAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGIIPIAHRGLNSIAPEESLEAYSLAVRSGYNDIECDIYFTEDGIPVLHHDATINSIARNSDGTELTQPVKIGERMLVELNSYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKRHYTDEQSQVLLDIVSKYRMANKVGWQSFDHSSLDYIASHDENAQLELLAGNITDDLIAEGKKRINGKRKVVLSVGQGVTQQLVDQAHSEGFDVYIWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLVTNLTWHRNTYINGKGDIYNLLGGMKDGEEHTFAHASGENWFTAIVNLKKNTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTAVNGTPVNPNSWGDNDVKLSDSYTRYSVTYTTYSDNKPFQIGFRTSSSTGTVSIKNIRLTAGTETSWGATICMMAYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAVPSTIITDSENHTFKITIPSGGTKLFLNSNESLVPTVFKQSASSGI
Physico‐chemical
properties
protein length:878 AA
molecular weight: 97642,27120 Da
isoelectric point:5,16652
aromaticity:0,09112
hydropathy:-0,35501

Domains

Domains [InterPro]
DC_1065
STR
1–340
DC_1065 IPR017946 IPR008979 DC_1292
PTHR46211
Unmapped
371–614
PTHR46211 DC_1520 G3DSA:2.60.120.260
IPR017946
STR
375–615
IPR017946
IPR030395
ENZ
376–621
IPR030395
IPR017946
STR
378–612
IPR017946
cd08556
ENZ
379–612
cd08556
IPR030395
ENZ
381–612
IPR030395
PS50007
ENZ
385–429
PS50007
YP_009097896.1
1 878
Architecture
STR
STR
RBD
STR 1-340 | STR 369-818 | RBD 819-878
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009097896.1
1 878
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,9522
Central domain 371 637 268 0,7949
C-terminal 638 878 240 0,3401
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-637
C-terminal
638-878

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Ld25A
[NCBI] 		1500734 Uroviricota > Caudoviricetes > Cequinquevirus >
Host Lactobacillus delbrueckii
[NCBI] 		1584 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009097896.1 [NCBI]
Genbank nucleotide accession
NC_025415 [NCBI]
CDS location
range 12464 -> 15100
strand +
CDS
ATGATCGAACCAGAAGTTAAGCTTTTGATGTTGAAGGGCGACAAAGGCGATGGCCTTTCAGACGATGACATGCACAAGGTAGAGTCGTTAATTGACTCCAATGTTGACGAGGCAAAAGGAAGTCTCAGCAAAGCATTAAGTGCACAGCTTGAAGTTGCGAGAATTGACGTCATGAACCAAACCAAGTCGTTTGTCACTTCCAGCGTGGTTGATGCGAAGGATGACATTAACAGAGCAGTAAATGCGAGAATTGCGGGTGCGAGATTTATCCCGAAGGCATTTGCCAACGCTGACGATCTGAAAAAGGCGTATCCTAAAGGCCAAGACGGCATTTTCGTTGTAGCGGATACCGGGCACATGTGGTTATTCGTCAACGGTGATTGGAAAGATTGTGGAGTATATCAAACCCCAGTTCAAAAAAATCAAACGTTTACGTTCCAACCTTCTAGGGACGGCTTCCCGAATTACGATACGGCGACACGCAAGCTTGACTTTAGATGTATTACAGACAAGGCACAGGTCACGACACCAAGCGGTGATGCCTATAGATTTCCTCAGCACACGGTAGTAGATGTTAACTGGGAATTTACCACGGGTGTCATTATCTTTGATACGAATACCTTGTCCGTTATTTCACAGAATCCGTATATTCCCATCAACGCAAATCAGTACGTCTTGGCTAGTTATAGAAGATACCCAGCTGAAGGAGACCGACTTACTTGGAACGGTGTTTTAGCACAAAGTCTGCTGATTAATGGGGAGACTTACATGGAACAGAACGTTCAGTTCGTTCCATCAAAAGACGGTTTACCATACTACGATAGCAAGCGGAAGATAATTAATTTTAATTGCCTTACCGACAGAGCCTACGTCTCTTACCAAAATCGCAATTACACGTTGCCACATAATGCTACTGTCGCTCTTGACTTCTCCCGTGGTGTAACTTCCTTCGACATCTTAATCGACATGAAGACGGGGGAGGTCAGCACCAACGACAAGTATCGTTTGTTAACGCCAAACATGGACAAAGTTTCATTTGCGACCGTTAGACTTTTGAATAATGGCAAAGTTGCGATTGAAGGCATTAAATTGCTAGATGAGGTTAGCCCGAAGAATAGCACCGGGATCATTCCAATCGCACACCGTGGTCTTAATTCGATTGCTCCGGAGGAGAGCTTGGAGGCCTATTCTTTGGCCGTAAGAAGCGGCTACAACGATATTGAGTGCGACATTTACTTTACGGAAGACGGCATTCCTGTTTTGCACCATGACGCCACCATCAACAGTATTGCCCGCAATTCAGATGGTACGGAGTTGACTCAACCAGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACTCCTACGACTACGGGATTTACAAGTCTGAGATCTTCAAAGGCCTCAATATTTGCACATTTGAAGACATTATCAAGTTCGCTCGCAGAACAGGAGCAAGAGTTCATGCTGAGTTGAAGCGACACTATACTGATGAACAAAGCCAAGTGCTTTTAGACATCGTTTCTAAGTATAGAATGGCTAACAAGGTTGGGTGGCAATCATTTGATCATTCAAGTTTGGATTATATTGCTAGTCATGACGAAAATGCACAGTTGGAGTTGTTAGCTGGAAACATTACCGATGATTTAATTGCGGAAGGCAAAAAGAGGATTAATGGCAAGAGAAAAGTCGTTCTTAGTGTAGGTCAAGGCGTAACACAGCAATTAGTAGACCAAGCTCATTCCGAAGGGTTTGATGTTTACATTTGGACTGTTGACGACATTGATGGAGCTAAAAAGTTAATAAACATGGGCGTAGACGGGATCATGACCAACGGCTACATTGATTTGCCGAATTTGCTGAGTAACGAATACGACTTGCAAGTTTCTAATTCTCCTGCGGTTGATTTAGTAACTAATTTGACTTGGCATAGAAACACGTACATTAACGGTAAAGGCGACATTTACAATCTGCTTGGTGGTATGAAAGACGGAGAAGAGCACACATTTGCCCATGCGTCTGGTGAAAACTGGTTTACCGCTATTGTTAATCTTAAAAAGAACACATACACTCTCTCCTTTGATGCAAAATCAACGGTAAACAATGACAACCTTACCACTCTCATGAGACATGTCGAGATGGGGGACAACAATTTTAATTGCGTAACTGCGGTTAATGGAACTCCAGTAAATCCTAATAGTTGGGGAGACAATGATGTAAAATTGTCTGATAGCTACACTCGCTATTCGGTAACGTATACTACTTATTCCGACAACAAGCCGTTCCAAATTGGATTTAGAACAAGCTCATCAACGGGCACAGTAAGTATCAAAAATATTCGGCTTACGGCAGGAACGGAAACCAGCTGGGGCGCAACTATTTGCATGATGGCATATTTAGACGCTAATCAAGGTGAGACGTACTATGCAAGACAATTAGAAGAAGGGGCATGGCTAAATGCACCAATGGTAGTTACAAACGACAATCTTGATGCTGTCCCATCAACCATAATTACTGACAGTGAAAACCATACGTTTAAAATTACAATTCCAAGTGGAGGAACGAAGCTTTTCTTAAACTCCAACGAATCTCTCGTTCCAACGGTATTCAAGCAATCAGCTTCAAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
09733fe761075e8bcbb6224bf2fd593db95fd7c44c81e59e7230c40c62ac3496
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3054
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactobacillus delbrueckii subsp. bulgaricus Group b Phages Casey,E.D., Mahony,J., O'Connell-Motherway,M., Bottacini,F., Cornelissen,A., Neve,H., Heller,K., Noben,J.-P., Dal Bello,F. and van Sinderen,D. 2014-09-15 — GenBank