Protein

View in Explore
Genbank accession
QBJ00587.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MATENGFFTNQTQFQDDPNISQRDNLKGFYGTAVRPAYIEDLVAKAEEAAANSKTYSDQSKQYRDETQVLRDETETLFNQTDGIYNLTVGVYNDTVGVYNDTVSARDLALQYRDQALGYANAAAQSATEAATSAANAEQSYQDTAALLPALQAEVDQNTADIALLDSTTVKTSGDQSISGNKIFTTNIITNTIRSTVGGDQGMIMFGGGSTRIGGSGSVAGIQLRPNGLDTGNTDFDYFAVKPTGVLQYEGTDNMSITRANGAQGMFVYADGRTFIAGNNNEVNLRPLGLSNASKGVTVGATGSIVQKHSGSAAYTFQDAVNSGTGSSSYFQWTHADAVRRGFIGFGSSANDNLTWFNDTGSANIVLKDDGNVQLNSGSGDTIILSGTSISDRYEATGAAGGSWGHAISASLTLTGGNSGLAYNVFKMGSDGPKMQALGEGGSTVRLYPGGGNSNFISWQPNTMTYYYTGTSPMTWVMHANADNVDSSIRLRESAGANGVDFGYAGSSANNEFFINTRTNNVDSRAFSLYRDRSRALFNTNAVDVESSGATKMNLYRADGDTNVNIRFTSNLGNDVYAGKTTSNFAIGSAVDLSSAGNQWMIIGSPAATFRVPVVLDGGSPTGSHAIRRDWAEDNLLRRNSGSVTTQDWNTLINSGVYRIGGVTGANRPSAPTVGEGYTYGTLLCMNDSNATNGVKTHLYFPHNTPNADTSPRLPFYRSGYTADYGEWRTLLTLQYADTRYTLVSSDINLKSEVKEVTGALDLVNQIGSYSYIKENAEITQILQEDGGYTGTDEHYRFEMGFIAQEVEKVFPHLVKDDARGYKAIKTGDNTLLAVAYQALRELNAKTTDLEAKNTELESKNTELEARLAAIEAHLGLGE
Physico‐chemical
properties
protein length:879 AA
molecular weight: 94154,88940 Da
isoelectric point:4,80070
aromaticity:0,09101
hydropathy:-0,41229

Domains

Domains [InterPro]
DC_0194
STR
2–863
DC_0194
Coil
Unmapped
39–59
Coil G3DSA:6.10.140.2190 cd19958 IPR030392
IPR030392
CHP
746–816
IPR030392 Coil
QBJ00587.1
1 879
Architecture
STR
STR 2-863 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBJ00587.1
1 879
Domain Start End Length (AA) Confidence
N-terminal 1 819 819 0,2195
Central domain 820 868 50 0,2436
C-terminal 869 879 10 0,9943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-819
Central
820-868
C-terminal
869-879

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_BA6
[NCBI] 		2530170 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ00587.1 [NCBI]
Genbank nucleotide accession
MK483107.1 [NCBI]
CDS location
range 37790 -> 40429
strand -
CDS
ATGGCTACAGAAAACGGTTTCTTTACGAACCAAACACAATTTCAAGATGACCCTAACATCTCACAACGAGATAACCTAAAGGGTTTCTATGGTACTGCTGTTCGTCCAGCTTATATTGAGGATTTGGTTGCTAAGGCAGAAGAAGCCGCAGCCAACTCCAAGACTTACAGTGACCAGTCTAAACAGTATCGAGATGAGACACAGGTATTACGTGATGAAACAGAAACACTGTTTAATCAAACAGACGGTATTTACAACCTTACAGTGGGCGTATATAATGATACTGTTGGTGTCTACAATGATACAGTAAGTGCACGAGACTTAGCACTACAATACCGTGACCAAGCTCTAGGTTATGCTAATGCTGCTGCACAATCAGCTACAGAGGCTGCTACAAGTGCTGCTAATGCAGAACAGTCTTACCAAGATACTGCTGCACTATTACCAGCACTACAAGCTGAGGTAGACCAAAATACAGCAGATATTGCACTGTTAGATAGCACAACTGTTAAGACTTCTGGAGACCAATCAATCTCTGGTAATAAGATTTTTACAACTAACATTATTACAAACACAATCAGAAGCACTGTTGGTGGTGACCAAGGTATGATTATGTTTGGTGGTGGTTCTACTCGTATTGGTGGCTCAGGTTCAGTTGCTGGTATTCAACTACGACCAAATGGTTTAGATACTGGGAATACAGATTTTGATTACTTTGCAGTTAAGCCTACAGGTGTTCTTCAATACGAAGGTACAGATAACATGTCCATCACTCGTGCAAATGGCGCACAGGGTATGTTTGTTTATGCAGATGGTCGTACCTTTATTGCTGGTAACAACAATGAAGTTAACCTGCGTCCATTAGGACTATCTAATGCAAGCAAAGGGGTTACTGTTGGTGCTACAGGTTCAATTGTGCAAAAGCATTCGGGTAGTGCAGCATATACTTTCCAAGATGCTGTAAACTCAGGTACTGGTTCAAGTTCTTACTTCCAATGGACACATGCTGATGCCGTTCGTCGAGGCTTCATTGGCTTTGGTTCATCTGCTAATGACAACCTGACGTGGTTTAATGATACAGGCAGTGCCAACATTGTTCTTAAAGATGATGGTAACGTTCAGTTAAATTCAGGTTCCGGTGATACTATTATCCTAAGCGGTACTAGTATTTCTGACCGTTATGAAGCAACAGGTGCAGCAGGTGGTTCTTGGGGTCACGCTATTAGTGCTTCTTTGACATTGACCGGAGGTAACTCTGGACTTGCTTATAACGTGTTTAAGATGGGTTCTGATGGTCCTAAAATGCAAGCTCTTGGTGAAGGTGGTAGTACTGTTCGTTTGTATCCAGGTGGTGGTAACTCCAACTTCATCTCTTGGCAGCCAAACACAATGACCTATTACTACACTGGTACTAGCCCTATGACTTGGGTTATGCACGCAAATGCAGACAACGTTGATTCATCTATTCGTTTAAGAGAATCTGCTGGTGCAAATGGTGTTGACTTCGGTTACGCAGGTTCATCTGCTAACAATGAGTTCTTCATTAACACTCGTACTAACAACGTTGATAGTCGTGCTTTCAGCCTATACCGTGACCGTAGTCGTGCGCTATTTAACACGAATGCAGTAGATGTAGAATCTAGCGGCGCTACTAAGATGAATCTGTACCGTGCAGATGGCGATACTAACGTTAACATTCGATTCACTAGTAACCTAGGTAACGATGTATATGCAGGTAAGACTACCAGTAACTTTGCTATCGGTAGTGCAGTAGACTTGTCATCTGCTGGAAACCAATGGATGATTATTGGCTCACCCGCAGCTACATTCCGAGTACCGGTAGTATTGGATGGTGGTTCTCCAACAGGTAGCCATGCTATCCGACGTGATTGGGCTGAAGATAACTTACTTCGTCGTAACTCAGGAAGTGTCACTACCCAAGACTGGAATACCCTGATTAACTCAGGTGTTTACCGTATTGGCGGTGTTACTGGTGCAAACCGTCCAAGTGCTCCTACTGTAGGAGAGGGCTACACTTATGGTACATTGTTGTGTATGAATGATAGCAATGCTACCAATGGTGTTAAGACGCACTTGTACTTCCCACATAATACACCAAACGCTGATACGTCACCACGATTACCGTTCTACCGTTCAGGTTATACTGCTGACTATGGTGAATGGCGTACCTTGCTAACGCTTCAGTATGCAGATACTCGCTACACTCTGGTTTCTTCTGATATCAATTTGAAATCTGAGGTCAAAGAAGTCACAGGTGCACTGGATTTAGTGAATCAAATTGGTTCTTACTCTTACATCAAAGAGAACGCTGAGATTACTCAGATTCTTCAAGAGGATGGTGGTTACACAGGTACAGATGAGCATTATCGTTTCGAGATGGGCTTCATTGCACAAGAAGTTGAAAAAGTATTTCCTCATCTTGTAAAAGATGATGCCCGTGGTTATAAGGCTATCAAGACTGGTGATAACACACTATTGGCTGTAGCTTATCAAGCTCTCCGTGAACTTAATGCCAAAACCACAGACCTAGAGGCTAAGAATACAGAACTAGAATCTAAAAATACAGAACTAGAAGCACGCCTAGCAGCTATTGAAGCACACCTAGGTTTAGGAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
72cc883c3cc36a5af37def67dcd002e4c1345910655cb7f1a3b3a9dd17beb7e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5929
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of a Novel phage vB_VpP_BA6 lysing Vibrio parahaemolyticus Yang,M., Liang,Y. and Wu,Q. 2019-07-30 — GenBank