Protein

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Genbank accession
QMP81954.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTVSTEVDHNDYTGNGVTTSFPYTFRIFKKSDLVVQVADLSKNITELVLDTDYTVTGAGGYTGGNVILSTPLTSGYQISISRELPVTQETDLRNQGKFFAEVHEDAFDKLTMLIQQVRSWLRLALRKPSFVANYYDAMNNYIRNLRDPRDLQDAATKNYVDSVANTNLSHTLRTPEAIPPLPGVEQRKNKIVAMNDSGDPIMVLPESGSAADVLIELAKPTGAGLIGSLSGKSVQQELMIKTTSFTSLQDAANYAVNGMIVDEDYYFNDGETVDFGGKVLTIDCKAKFIGDGKLTFENLGSGSRIVHPHMQSQTVPYVISRWDSNGEWINDPSTIISTLTQSRTQGYAPTTNDVDIYSSLPDNVKNQNLISHLIISNSSGIDVFYPKATFGSYESFKNNNVKFWYPCDFYGDMTNCIAFTAWDSTDYYHGNYVIGGSTNYGSGSGVCFYRNDGGVSHDGGVIGGFTPYRCGESGVKTYQNEVNGISQRCYNLRFIDIHPIETYYDGVDLNADYGTPTERQHDYTLAQYGWNNLPTNHIVSNIQAYKTHGVGIWGDGSTGFYRDIYASYSRGAGIFIKGSGKTFKNLTSVQNNSANTPGENQITLDGANIIDGVNIINYTQPPGLAIFAPNSTVTNLNAPGIPSSSINIGNIEGLVVGNLIHVQPNLANQTSAVYLNVVNTGVASKREDTTKIGPGASEVTRYVISGSAPRLTMRENHGDFGAVNIAFSGTVLPDEAVPDANSYSVYWDGTNLTALINHGGVLTRQKLTT
Physico‐chemical
properties
protein length:769 AA
molecular weight: 83811,08590 Da
isoelectric point:5,10536
aromaticity:0,09883
hydropathy:-0,30559

Domains

Domains [InterPro]
DC_0055
ATT
8–160
DC_0055 IPR012332
DC_1611
STR
136–257
DC_1611
IPR015331
RBD
241–767
IPR015331
IPR011050
STR
241–766
IPR011050
QMP81954.1
1 769
Architecture
ATT
STR
ATT 8-160 | STR 161-769
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QMP81954.1
1 769
Domain Start End Length (AA) Confidence
N-terminal 1 247 247 0,9960
Central domain 248 681 435 0,9899
C-terminal 682 769 87 0,8571
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-247
Central
248-681
C-terminal
682-769

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 66FD
[NCBI] 		2758313 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Heidelberg
[NCBI] 		611 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QMP81954.1 [NCBI]
Genbank nucleotide accession
MT580117.1 [NCBI]
CDS location
range 27606 -> 29915
strand -
CDS
ATGACGGTCTCAACCGAAGTTGACCATAACGACTACACGGGGAATGGGGTCACGACTTCTTTCCCTTATACCTTCCGAATTTTTAAGAAGTCTGATCTGGTTGTGCAGGTTGCAGACCTGAGCAAGAACATCACAGAATTAGTCCTTGATACTGATTACACCGTTACTGGTGCGGGAGGGTACACAGGAGGGAATGTAATACTGTCAACGCCACTGACAAGTGGATACCAAATCTCAATTTCACGTGAGCTTCCAGTTACACAGGAAACAGATCTTCGAAATCAGGGTAAGTTCTTCGCAGAAGTGCATGAGGATGCTTTTGATAAACTGACTATGCTGATTCAGCAGGTGCGCAGTTGGTTAAGACTGGCTCTACGTAAGCCGTCGTTTGTGGCTAATTATTATGATGCGATGAACAACTACATCCGTAATTTGCGCGATCCAAGGGACCTTCAGGATGCCGCCACCAAAAATTATGTAGATAGCGTAGCTAATACCAATCTAAGCCACACACTGAGAACACCTGAAGCAATCCCTCCGTTGCCAGGGGTAGAACAACGTAAAAATAAAATTGTCGCGATGAATGATAGTGGCGATCCGATAATGGTTCTTCCAGAATCAGGATCTGCAGCAGATGTATTAATAGAGCTTGCTAAGCCTACCGGTGCTGGGTTGATAGGATCTCTATCAGGAAAATCAGTCCAGCAAGAACTAATGATTAAAACAACATCATTTACATCACTGCAAGATGCAGCTAACTACGCAGTGAATGGAATGATTGTTGATGAGGATTATTATTTTAATGACGGCGAGACAGTTGATTTTGGAGGAAAGGTTTTAACTATCGACTGCAAAGCTAAGTTTATCGGGGATGGTAAATTAACATTTGAAAATTTAGGATCAGGATCACGCATTGTGCATCCACATATGCAGTCACAAACAGTACCTTACGTTATATCAAGATGGGACAGTAACGGTGAGTGGATAAATGACCCCTCCACTATCATTTCCACTCTTACTCAAAGCAGAACGCAAGGGTACGCACCTACAACTAATGATGTAGACATATATAGCTCTCTACCAGATAATGTTAAAAACCAAAATTTGATATCACATCTCATTATATCTAATTCATCAGGGATAGATGTATTTTATCCAAAAGCAACATTTGGATCATATGAATCATTTAAAAATAACAATGTGAAGTTTTGGTATCCATGTGATTTTTATGGAGACATGACAAACTGCATCGCATTTACTGCATGGGATAGCACAGATTACTATCATGGTAATTATGTAATCGGTGGTTCAACTAATTATGGATCAGGAAGTGGGGTGTGTTTTTATCGAAATGATGGAGGGGTTAGCCATGATGGAGGGGTCATTGGTGGGTTTACCCCTTACAGATGCGGTGAGTCAGGTGTTAAAACATATCAGAACGAAGTGAACGGAATAAGTCAAAGATGTTACAATCTTCGTTTCATCGATATTCATCCGATAGAAACGTACTATGATGGCGTAGATCTGAATGCTGACTATGGCACGCCAACTGAACGCCAGCATGATTACACATTGGCGCAATACGGCTGGAACAACCTTCCAACAAACCACATCGTTAGCAACATTCAAGCGTATAAGACTCATGGGGTTGGTATTTGGGGGGACGGCTCTACAGGGTTTTATCGAGATATCTATGCATCATATTCTCGGGGAGCAGGTATATTTATCAAAGGAAGTGGGAAGACTTTTAAAAACCTAACTTCCGTTCAAAACAATTCAGCTAACACGCCAGGAGAAAACCAGATTACACTTGACGGGGCAAACATAATTGATGGTGTGAATATAATAAATTACACACAACCACCAGGACTTGCTATTTTTGCTCCAAATTCTACAGTCACCAATCTTAATGCTCCAGGTATTCCTTCATCATCCATAAACATTGGCAATATTGAGGGGCTGGTGGTTGGCAACCTAATACATGTGCAGCCAAATCTTGCAAATCAAACTTCAGCTGTGTACTTAAATGTAGTCAATACTGGTGTGGCCTCTAAAAGAGAGGATACCACAAAGATTGGTCCAGGAGCGTCAGAGGTTACCAGATACGTAATTTCAGGTAGTGCACCAAGGTTAACCATGAGAGAAAACCATGGAGATTTTGGGGCGGTAAATATTGCATTCTCTGGGACGGTCCTGCCAGATGAGGCCGTACCGGATGCAAATTCCTACTCTGTATATTGGGATGGAACCAACCTTACTGCTTTGATAAATCACGGTGGTGTTCTTACAAGACAGAAGTTAACAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0e67a8ed37d60cc8a90630ac9991bd7d3b3a9ade9ddfe04f363f30679efbdc4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phenotypic and genotypic characterization of three lytic podoviruses infecting Salmonella serovars Riquelme-Neira,R.A. 2013 — GenBank