Protein

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Genbank accession
YP_009133646.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARTVPGSGAEIKPIFDKLFGVRAVEVINPGSGYDPEDPPRLTVTGCGTPSEECLLYPIIDGPSGKIVHVRVLSRGRGYDPLRLNIIPSAETTGVVDSFDVNRIWQSHPNSPTLGTFQSDTDRLRIVSDNDPKPADIFSERSGGAGSIVDRSFDQTFIYRGGKQVPFGQNRPFQKNKSLGIMANGTLLHTPEWGNAVGGAPEGFELDTVYNDNPKNTDVYDGIIDNQTYYYQSSKLVEHFKTTHGVLDWGLHEVFTWNVKTEVDNVLLTVSGIDEVLNPMEVGRTVLKIGDNSVSGEIAKIIRDGNNLITSVYIRQVTGVFTVEDRILGSTGFSFTVSTEPTTFPAGIFYIDFGVEAEEFGPFIAGQYYLAPENIKVKRNYVIIWNQDDPSNQVSDTFPFGHPMQFSTTQDGILNAGTLYYNSTGASGALGTDYENPFRALFIMNADETNRIYYYCQYHRYMSGYAGHEGYMVLDTEIEDEEPENNYYIRDYYNEDVVILPDEIQTQYTGPLASFLNIGIEDGGNGTGTSGGFDIGRHIVFGRQAGNRQLRLYLDLRNVSTLTFEVIRGTDTNGGENPDNVQESLRVFFGGTAYGSSVLVSYNNYNFDTLNSVTISIPPDSRKENQLVYVYQFGNSGTGFDSYGLKSITYGGGVQDLSRHPDGHSKILGMSFDGYPIYGPYGYFGSNNSVVRASSSYRLKSGIEVDGARPEQVAAETVTYAVTVSNNKFLYDAASPSFLNLKRGKTYVFNQDDSSNDGNILLLSTAEDGWHPTSDLSDIANKLNLYEHPSITYTLDGSSVTYDNYISGFISATTRSLTIAMPSDSPRVLNSFSYANASYGIRTVQDGYAMGSLYQDYIYDETAGTLDEHNGSYISTPEYPNGTYAYFLTEDSSGNPTFPYCVGPTYFGTPLFEGDTVPDLATEVPTIAEGNVVLEDDGTVSYIQMTKTGDGYFSPAVAQIIGGEGSGATASPVVQSVTGLTLLNEGRSFATPPTLIFEGGGGQGAQGAASISSLGKVTSINIIDEGDFYQTSPYILIDGGGGQGAKAIANINQGVITSIDVLDQGGGYVNPPNIIFTKLINLKRTTKARQSFNSAFQYLTGLTKDIDASSEEIFVSSTDAFPGSGTFLLNNEIVTYTGKSRGKFTGLTRGTNFNYDQRIILDTSQDVAGISNYNFNVGDRVIRRVETASSKIAKVYDWRPSTRELFVTFEVDELAFIDAGIASTEDAIVQFNAGLPESAGGSALPHTTEVSIGSQIFRLQLTGIVTVDDIDFVDIAENDGAGDGIPDLSNAGTDYENQISLDGGIFNSLYGIEETQGGTNTTLFAIGDNILDATPFPEQKFATVSTAGGLSEGVEHSAQVKITLDKADGNGQNYGVNEIVTGDLSGVTGTVVSWDTSTGILVVQSITPFNTGNVNIGVNGFLNEFSARSSIVDIVVQEPGTNYSAPPTVVIENAGDIQSTAVAVMTVAGDQVSSVTISNGGYGYKQEITTNILHPTITFTNDVSDTTGSGAIAYAILGGEKIAGSAGASYRIKNIEYQTVVQTS
Physico‐chemical
properties
protein length:1544 AA
molecular weight: 166470,52820 Da
isoelectric point:4,41357
aromaticity:0,10363
hydropathy:-0,23659

Domains

Domains [InterPro]
DC_1338
ATT
1–616
DC_1338 IPR025924 DC_0695
IPR025924
STR
828–892
IPR025924 DC_0756
YP_009133646.1
1 1544
Architecture
ATT
STR
ATT
RBD
ATT 1-616 | STR 664-712 | ATT 780-1013 | RBD 1014-1543 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009133646.1
1 1544
Domain Start End Length (AA) Confidence
N-terminal 1 356 356 0,8131
Central domain 357 701 346 0,4159
C-terminal 702 1544 842 0,0220
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-356
Central
357-701
C-terminal
702-1544

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014g
[NCBI] 		1493512 Uroviricota > Caudoviricetes > Pantevenvirales > Macariavirus > Macariavirus tuscon14g
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009133646.1 [NCBI]
Genbank nucleotide accession
NC_026924 [NCBI]
CDS location
range 74399 -> 79033
strand +
CDS
ATGGCAAGAACAGTTCCTGGCTCTGGCGCAGAGATTAAACCAATCTTTGACAAATTATTTGGCGTTCGCGCAGTAGAGGTTATTAATCCTGGAAGTGGATATGACCCTGAAGATCCTCCAAGATTAACGGTCACTGGTTGTGGGACACCTAGTGAAGAATGTTTACTATATCCTATCATTGATGGTCCTTCAGGTAAGATTGTTCATGTACGTGTTCTTAGTAGGGGTAGGGGGTATGACCCATTAAGACTTAATATTATCCCCTCGGCAGAAACTACTGGTGTTGTAGATTCTTTTGATGTTAATAGAATTTGGCAAAGTCATCCAAACTCACCAACTTTAGGAACCTTCCAATCCGATACGGATAGACTCAGAATTGTATCTGATAATGACCCCAAACCCGCTGATATTTTCTCAGAACGTTCTGGTGGAGCGGGTTCTATTGTAGATAGAAGTTTCGATCAAACTTTCATTTATAGAGGGGGTAAGCAAGTACCTTTTGGTCAAAATAGACCTTTTCAGAAGAATAAATCACTTGGCATTATGGCCAATGGTACATTACTCCATACACCAGAATGGGGAAATGCAGTTGGTGGTGCTCCAGAAGGATTTGAATTAGATACAGTCTATAATGATAACCCTAAGAATACTGATGTATACGATGGAATTATCGATAATCAAACTTATTACTATCAGTCATCTAAATTAGTTGAGCATTTTAAAACTACACATGGAGTGCTTGATTGGGGATTGCATGAAGTTTTTACTTGGAATGTAAAAACTGAAGTTGATAATGTATTACTAACTGTATCTGGTATTGATGAAGTTCTTAATCCTATGGAGGTAGGAAGAACAGTATTAAAGATTGGGGATAATTCTGTATCTGGAGAAATTGCAAAAATTATAAGAGATGGTAATAATTTAATCACCTCAGTCTATATTAGACAAGTAACTGGAGTGTTTACTGTAGAAGATAGAATATTGGGTTCTACTGGATTTTCATTCACAGTTTCTACAGAACCCACAACATTCCCTGCAGGTATTTTTTATATTGACTTTGGCGTAGAGGCTGAGGAGTTTGGACCTTTTATTGCAGGACAATATTATCTCGCTCCAGAGAATATTAAAGTTAAACGGAATTATGTAATTATTTGGAATCAGGATGATCCTAGTAATCAAGTTAGTGATACTTTTCCTTTTGGACATCCAATGCAATTCAGTACCACACAAGATGGTATATTGAATGCTGGTACTTTATATTATAATAGTACTGGAGCATCAGGTGCTCTCGGAACCGATTATGAAAATCCGTTCCGAGCATTATTCATTATGAATGCTGACGAAACTAATAGAATTTACTATTATTGTCAGTATCACCGTTATATGTCTGGTTATGCTGGGCATGAAGGGTATATGGTTCTTGATACTGAAATTGAAGATGAAGAACCCGAAAATAATTATTATATCAGAGATTACTACAATGAAGATGTTGTAATTCTACCTGATGAGATTCAAACTCAGTATACAGGTCCACTCGCTAGTTTTCTGAACATAGGAATTGAAGATGGTGGAAATGGTACTGGAACATCTGGTGGATTTGATATTGGTAGGCATATTGTATTTGGAAGACAAGCTGGTAACAGACAACTCAGACTATATTTAGATCTCCGCAATGTGTCTACGTTGACATTTGAAGTTATCAGGGGAACTGATACCAATGGCGGCGAAAATCCTGATAATGTTCAAGAAAGTCTTAGAGTCTTTTTTGGTGGTACTGCATATGGTTCTAGTGTCCTAGTTTCATATAACAACTATAACTTCGATACTTTAAATAGTGTAACTATAAGTATTCCTCCAGACTCCAGAAAAGAAAATCAACTTGTTTACGTTTACCAATTTGGCAACAGTGGTACTGGTTTTGATTCTTATGGACTTAAGTCTATAACTTATGGTGGTGGAGTACAGGATTTATCTCGTCATCCTGACGGACATTCTAAAATTTTGGGTATGTCCTTTGACGGTTATCCCATTTATGGACCATATGGATATTTTGGATCTAATAACTCTGTAGTAAGAGCATCCTCCTCATATCGTCTCAAATCTGGTATTGAAGTAGACGGAGCAAGACCCGAACAAGTTGCTGCAGAAACAGTCACGTATGCTGTTACTGTTAGTAATAATAAATTTTTATATGATGCTGCCTCTCCATCCTTCCTGAATCTGAAGCGAGGTAAAACTTACGTTTTCAATCAGGATGATTCTTCTAATGATGGAAATATTTTACTACTATCTACTGCTGAAGATGGTTGGCATCCTACATCAGACCTTTCAGATATTGCAAATAAACTGAATTTATATGAACATCCAAGTATTACATACACTCTGGATGGTTCTTCTGTAACTTATGACAATTATATTTCGGGATTTATTTCTGCAACTACAAGGTCATTAACTATTGCAATGCCTTCGGACTCACCTAGAGTTTTAAATTCTTTTAGTTATGCTAATGCATCCTATGGAATAAGAACTGTTCAAGATGGTTATGCCATGGGTAGTCTTTATCAAGATTACATTTATGATGAGACTGCAGGCACCCTAGATGAACATAATGGTAGTTACATATCTACTCCAGAATATCCTAATGGAACATATGCATATTTTTTAACAGAAGATTCTTCAGGCAATCCAACTTTTCCATATTGCGTCGGACCAACATATTTTGGAACACCTTTGTTTGAAGGTGATACTGTTCCAGATTTAGCAACAGAAGTTCCCACTATTGCTGAGGGCAATGTAGTTTTAGAAGACGATGGAACTGTATCATACATTCAAATGACTAAAACTGGAGATGGATATTTTTCTCCTGCAGTGGCACAAATTATCGGTGGAGAAGGTTCTGGTGCAACCGCATCTCCTGTAGTTCAATCAGTTACAGGATTGACTCTACTTAATGAAGGTAGATCATTTGCAACCCCTCCAACTTTGATATTTGAAGGTGGTGGTGGACAGGGTGCTCAGGGTGCTGCCTCTATTAGTTCTTTAGGCAAAGTTACGAGTATCAATATTATTGATGAGGGTGATTTTTATCAAACTTCCCCATACATCTTAATTGATGGTGGAGGAGGACAGGGTGCGAAGGCAATTGCCAATATTAATCAAGGTGTAATAACGAGTATAGATGTTCTTGACCAGGGTGGTGGTTATGTAAATCCTCCTAATATCATCTTCACAAAACTGATTAACTTGAAGAGGACTACAAAAGCCAGACAATCATTCAATAGTGCTTTCCAATACCTTACTGGTCTTACTAAAGATATTGATGCATCTTCTGAAGAAATTTTTGTATCATCTACAGATGCATTCCCTGGTTCTGGTACATTCCTTCTCAATAATGAGATTGTTACATATACTGGAAAAAGCAGAGGAAAGTTTACAGGTCTTACTAGAGGAACCAACTTTAATTACGACCAAAGGATAATTCTTGATACATCACAAGATGTTGCTGGTATTTCCAACTACAACTTTAATGTTGGTGATAGAGTTATTAGAAGGGTTGAAACTGCTAGTAGTAAGATTGCCAAGGTTTACGATTGGAGACCAAGCACTAGGGAATTATTTGTAACTTTTGAAGTTGACGAACTGGCATTTATTGATGCTGGTATTGCCTCTACAGAAGATGCCATTGTTCAATTTAATGCTGGATTACCAGAAAGTGCTGGAGGATCAGCACTTCCACATACAACAGAAGTTAGTATAGGTTCTCAAATCTTTAGATTGCAGTTGACTGGAATTGTAACTGTCGATGATATCGACTTTGTTGACATTGCAGAGAACGATGGTGCTGGAGATGGTATTCCTGATTTGTCAAATGCAGGAACGGATTACGAAAATCAAATTAGTTTAGACGGCGGAATCTTCAATTCACTATATGGTATTGAAGAAACACAAGGTGGTACAAATACCACTCTATTTGCTATTGGTGATAATATCCTAGATGCAACTCCATTCCCTGAGCAAAAATTCGCAACTGTTTCTACTGCGGGTGGATTGTCCGAGGGTGTCGAACATTCAGCACAAGTTAAGATTACCTTAGATAAGGCCGATGGAAATGGTCAAAATTATGGAGTGAATGAGATTGTAACAGGCGATCTTTCTGGAGTTACTGGAACAGTAGTTTCTTGGGATACTTCAACGGGTATATTGGTTGTTCAAAGTATTACACCATTTAATACAGGTAATGTTAATATTGGTGTTAACGGTTTCCTAAACGAATTTTCTGCTAGGAGTTCAATTGTCGATATCGTTGTACAAGAACCTGGTACAAACTATTCAGCACCACCAACTGTAGTTATTGAAAATGCTGGTGATATTCAATCAACAGCGGTTGCAGTAATGACAGTAGCAGGTGACCAAGTTAGTTCTGTAACTATTAGTAATGGTGGATATGGTTATAAGCAGGAAATTACAACTAATATTTTACACCCAACAATTACATTTACTAATGATGTATCAGATACAACTGGTTCTGGTGCGATAGCATATGCTATCTTAGGAGGTGAGAAAATAGCAGGTAGTGCTGGTGCTTCTTATCGCATTAAAAATATTGAATATCAGACGGTTGTACAAACCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
08f7e4ddfbd0922632e94b91d71e501873bf584586c52fddea3eec91b6aab12a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8112
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank