Protein

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UniProt accession
A0A173GBU8 [UniProt]
Protein name
Polygalacturonase
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRGQYMIYVKDFTGITEAVKIQNAINAAAVSTSPSKTVMLEEKDYYLESSITLLNDVELLFGYRSRLVIGGNFPVLLIGRNASVTNPFIAIDAPTFDSPVFYLDGKNKYYNTWNKTAIKDGVVLNWSGSHKGIGVRFYSGGTDHEISFVDVSNIKLVGLRKGIELEAKAPASGMAWVNANRFNNISIEDCVEMITLDSSETIPNECSGNIFSGLQLQPSTATTKVLKVSGQHNRFDGMLWDISLIPTAKFVDVTANSSYTKIDFNRSLPSTKVQDSGVSTILQ
Physico‐chemical
properties
protein length:283 AA
molecular weight: 31076,95020 Da
isoelectric point:5,96147
aromaticity:0,09541
hydropathy:-0,06784

Domains

Domains [InterPro]
IPR012334
STR
16–275
IPR012334
IPR011050
STR
20–208
IPR011050 DC_0399
A0A173GBU8
1 283
Architecture
STR
STR 16-283
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A173GBU8
1 283
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9217
Central domain 17 272 257 0,9943
C-terminal 273 283 10 0,1920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-272
C-terminal
273-283

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage SalinJah
[NCBI] 		1837830 Uroviricota > Caudoviricetes > Herelleviridae > Wphvirus > Wphvirus BPS13
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANH50740.1 [NCBI]
Genbank nucleotide accession
KX011169 [NCBI]
CDS location
range 32995 -> 33846
strand +
CDS
ATGAGGGGGCAATATATGATATATGTGAAGGATTTTACTGGAATAACTGAAGCAGTTAAGATACAAAATGCAATTAATGCAGCAGCTGTATCAACTTCTCCATCCAAGACCGTAATGCTAGAAGAGAAGGATTATTACCTTGAGTCATCTATCACTCTGTTAAACGATGTAGAATTACTGTTTGGTTATCGTTCAAGACTAGTCATTGGTGGTAACTTCCCTGTTTTATTGATAGGGCGAAATGCTTCTGTTACAAATCCTTTCATAGCTATCGATGCTCCGACTTTCGATTCACCTGTCTTTTATCTTGATGGTAAGAATAAATATTACAATACATGGAATAAGACAGCGATAAAAGATGGTGTAGTTCTAAACTGGTCAGGCTCACATAAAGGTATAGGCGTTCGATTCTACTCCGGAGGAACTGACCATGAGATTTCATTTGTGGATGTGTCCAACATTAAACTTGTCGGTCTAAGAAAAGGTATTGAGTTAGAGGCTAAAGCCCCAGCATCAGGAATGGCATGGGTAAACGCTAATCGATTCAATAACATTTCCATAGAGGATTGCGTAGAAATGATTACACTGGATAGCAGCGAGACAATACCGAACGAATGTAGCGGTAACATCTTCTCAGGTCTTCAGTTACAACCATCTACTGCAACAACAAAAGTCTTGAAAGTAAGTGGGCAGCATAACCGTTTCGATGGTATGCTTTGGGACATCTCTTTAATACCTACAGCTAAGTTTGTAGATGTTACAGCGAACAGCTCCTACACGAAGATAGATTTCAATCGCTCATTGCCTAGTACGAAAGTACAGGATAGTGGAGTAAGCACAATTTTACAATAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
f8bdbead94e320e58de36ede53b830da9f9bcb374b82fac8e4ab350d1fc3f874
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9083
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50