Protein

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Genbank accession
UQS94828.1 [GenBank]
Protein name
needle head protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKIPYGLGAYTRNRGNLPPLELINLFVEKSDSQGVILQSRKALVEVADVGAGPVRATFQKDGVFGGDRFTLSGDEFYRGATLLGTVAGGGQARIVSNGLEVLVNAGGLVYSYNGTNFINAGFPEAAATTIAFTGRYFIGLSAGTGEWYFSAVNNGRSWDALDFATAENEPDALLDVLVLDGVLVFFGTESIEFWGFTGDADLPYSPIQQRVFEQGIYATGCAVRVDNSFYWVGKDKIVYRNGDVPQAVSDDGIVEKAEGSTNLTLFVLEDERHKFVCLRGDDFTHPHDVTTGQWCEFKSYGRTNFRATADFGDDETGKIWAWGGYDDEGIIERLFMAGAALEEATQIDNIRLTCEVGTTPNLVGIYTDPTLEMRFSYDAGNTWEDWEAETLGAQGKYRQRVEWRALGMFDDPGALFQFRITDPVSFRLSDVQANAATGGRQR
Physico‐chemical
properties
protein length:442 AA
molecular weight: 48494,31340 Da
isoelectric point:4,50321
aromaticity:0,12443
hydropathy:-0,20724

Domains

Domains [InterPro]
DC_1784
STR
7–442
DC_1784
IPR021098
STR
36–236
IPR021098
UQS94828.1
1 442
Architecture
STR
STR 7-442
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UQS94828.1
1 442
Domain Start End Length (AA) Confidence
N-terminal 1 322 322 0,9346
Central domain 323 431 110 0,3067
C-terminal 432 442 10 0,4120
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-322
Central
323-431
C-terminal
432-442

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudanabaena phage Pam1
[NCBI] 		2936517 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudanabaena sp.
[NCBI] 		1153 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UQS94828.1 [NCBI]
Genbank nucleotide accession
ON014753 [NCBI]
CDS location
range 6538 -> 7866
strand +
CDS
ATGAAAATTCCGTATGGCCTTGGCGCATATACGCGCAACAGGGGCAATCTGCCGCCACTGGAACTTATCAACCTGTTTGTTGAAAAGTCTGACAGCCAGGGGGTAATCCTGCAAAGCCGCAAGGCACTAGTTGAAGTGGCTGATGTAGGGGCGGGGCCGGTTCGGGCCACGTTTCAAAAAGACGGTGTGTTTGGGGGTGACAGGTTCACACTATCGGGCGATGAATTTTATCGCGGTGCAACCTTGTTGGGGACAGTCGCGGGCGGGGGGCAAGCCCGCATAGTATCGAACGGGCTGGAAGTTCTCGTTAACGCTGGCGGCCTTGTTTACAGCTATAACGGCACAAACTTTATAAACGCTGGCTTTCCTGAAGCGGCAGCAACCACAATCGCCTTTACAGGCCGGTATTTTATCGGATTGAGCGCGGGAACAGGTGAGTGGTATTTTAGCGCGGTCAATAATGGCCGTTCATGGGATGCACTGGACTTTGCCACGGCTGAAAACGAGCCGGACGCGCTGCTAGATGTTCTGGTGCTTGATGGCGTCCTTGTGTTTTTCGGGACGGAAAGCATCGAGTTTTGGGGCTTTACGGGGGATGCAGACCTTCCCTATTCGCCTATTCAGCAGCGGGTATTTGAACAGGGCATCTACGCCACTGGCTGCGCTGTAAGGGTTGACAATAGCTTTTACTGGGTGGGCAAGGATAAGATTGTTTACCGCAATGGCGATGTGCCGCAGGCGGTTTCCGATGACGGCATTGTTGAGAAGGCAGAAGGTTCAACCAATCTGACCTTGTTTGTCCTAGAGGATGAACGCCACAAATTTGTTTGCCTGCGTGGCGATGATTTCACGCACCCGCATGACGTAACAACTGGCCAATGGTGCGAGTTTAAAAGCTACGGGCGCACCAATTTCCGCGCTACGGCTGATTTTGGCGATGATGAAACCGGCAAAATTTGGGCTTGGGGCGGCTACGACGACGAAGGCATCATTGAACGCCTGTTCATGGCTGGCGCTGCTTTGGAAGAAGCAACACAGATTGATAATATCCGCTTAACCTGTGAAGTGGGCACAACGCCAAATCTAGTCGGTATCTACACCGATCCTACGCTAGAAATGCGGTTCAGCTACGATGCTGGCAACACTTGGGAAGACTGGGAAGCGGAAACCCTAGGCGCACAAGGTAAATACCGCCAGCGGGTTGAATGGCGGGCCTTGGGCATGTTTGATGACCCCGGCGCTTTGTTTCAATTTCGCATCACAGACCCCGTTAGTTTCCGCTTGTCTGATGTTCAGGCAAACGCGGCAACGGGTGGAAGGCAACGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a78e9c9fdf8d8b906fcd23b44f2e50299775ef5d70bb5d063ca10380fbb107bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8256
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining Du,K., Yang,F., Zhang,J.T., Yu,R.C., Deng,Z., Li,W.F., Chen,Y., Li,Q. and Zhou,C.Z. 2022 35974417 GenBank