Protein

View in Explore
Genbank accession
YP_004508453.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
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
Physico‐chemical
properties
protein length:578 AA
molecular weight: 57272,50690 Da
isoelectric point:4,05003
aromaticity:0,07785
hydropathy:-0,86920

Domains

Domains [InterPro]
DC_0656
STR
3–139
DC_0656 DC_1453 DC_0923 DC_1951
IPR008160
STR
77–134
IPR008160 IPR050149
DC_0258
STR
131–200
DC_0258 DC_0258 DC_0341
YP_004508453.1
1 578
Architecture
STR
RBD
STR
STR
STR 3-299 | RBD 300-326 | STR 327-422 | STR 445-558 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CRM01
[NCBI] 		1026955 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004508453.1 [NCBI]
Genbank nucleotide accession
NC_015569.1 [NCBI]
CDS location
range 25264 -> 27000
strand +
CDS
ATGTCGCTCTTCAAAAAGACTAAAGTTATAGGTAGTTTAGGCATTTCCCCTACTATCACAAATAAGACAATATTTTCTGATGTAGAACCCACAGAAAGAGAAAATGGTGGAGATTTAAGATCTGGAGATCGTTGGGTCAATACTTTAGATAGTACAGAATCAGTCTGGAGTGAAGATATACTTCCAGATGGCGCCTGGATATTAATATCATCCAATTCGACAGAAACAGGGCCTCAAGGATTCCAGGGAGATCAGGGCCCCCAAGGTGTTGCAGGAAGTAATGGAACTCAAGGCCCACAAGGATTTCAAGGGGCCGATGGAATTAACGGAACTCAAGGTCCGCAAGGTTTTCAGGGCGCAAACGGAATTGACGGTACTCAAGGGCCTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCACAAGGATTTCAAGGTGTTGGGGGTAATAATGGATCTCAGGGCCCTCAAGGTTTTCAGGGAAATCAAGGATTAAGAGGATTTCAAGGTTTTCAAGGTGATATTGGTGCACAGGGCTCTAGAGGATTCCAGGGTGATCAGGGTCCGCAAGGATTTACTGGACTTCAAGGTTCACAAGGTGCACAAGGTTCACAAGGCCTTCGTGGTTTTCAAGGGTTTCAAGGAAACCAAGGAGACTCAGGTACTCAAGGCCCTAGAGGATTCCAAGGATTTCAAGGTGATACTGGACCTCAAGGTGTAACTGGCGTAGGTACTCAAGGCCCTAGAGGATTCCAAGGATTTCAAGGTGATACTGGACCTCAAGGAACTCAGGGAGTTGCGGGAAATACAGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGGCCCCAAGGTTTCCAAGGAAATGCAGGGAGTAACGGAACTCCAGGCCCCCAAGGATTTCAAGGTGTTGCTGGAAGTAATGGAACCCAAGGTCCCCAAGGATTTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCTCAAGGTTTCCAAGGAAATGCAGGCTCTCAAGGTCCCCAAGGATTTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCCCAAGGATTTCAAGGTGTTGCTGGAAGTAACGGAACTCAAGGTCCTCAAGGTTTCCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCACAAGGATTTCAAGGGAATCAAGGTGCAACTGGTTCCGGTACTCAAGGACCACAAGGTGCTCCTGGTGTAGGAACACCAGGCCCTCAAGGTTTTCAAGGCCCTCAAGGTCCACAGGGAGGTGGTGGAGGGAGTGGATATGTTTATACATATTCAGATACAGAACCAACTAGTCCAAACCCAGGAGATGAATGGACAGATAGTTCTGATCCTAAATTACCAACTTATAGGTATATTGATGATGGTAATACTGCCCAATGGGTAGAATTAGTTGTAAGTGGTCAAGCTGGACCACAAGGTGATCAGGGCGATCCTGGAATTTTTACGGGAACACCTTCGTTTATACAATCAACACAACCAACTCTATTGGAGTTGAATGGAAATGATAAATACATTTGGTGGGATACATCTAACGGATTAACTCTTTGGATAGAGGACGGAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
498a231f569f8765a858e4cc81fcde3f55efab2fd42f520aaec78126ec837530
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50