Protein

View in Explore
Genbank accession
AFD02945.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MANRIQLRRGGAQEWANSNPTLAQGELGIELDTGRFKIGDGVTAWNTLRYERPVESTSNTANTLVQRDADGNFAAGTVTATLIGNSSTAARLASTRQIQISGDVQASGVFDGSQNLNLTSAISLISTLPHYDGTDTATGTYTKVTLDAKGRVTNASNPTTLADYNLNGTVEGSSAQPYDLDLVAVAGLTTTGLISRTSGGAMSTRTITGTAGRISINDGGGINGNPTIDIITTAVVPGNYNTESLTSVSGVGSSSEPFGTQTVNATKFTDDDRGRLTSATNVPIATATEGSKYANYGAGTTYVRYDIIQNASKVYQAITGIAAGSGAPTHSSGDSGGWRYLAAEATEQKGLASFAQEDFDVDANGHVTIAAVGVDNNQLQNNRIGFADGNTVENFELDQELTATTGYRGLNYLNYVKVNDTSGNLLFGAKNTGEGGAGEVDINVRTVISDPDIILDGATAQQIDKTGDGNLNIELTQNTATNRNFTVASTNAGSGTSTLTLTAEELLKSMHLLLLVKYTLKIRDSKIIILQLLMLPCTWIQVMIEQSLD
Physico‐chemical
properties
protein length:549 AA
molecular weight: 57520,69040 Da
isoelectric point:4,65838
aromaticity:0,05647
hydropathy:-0,22951

Domains

Domains [InterPro]
SSF69349
STR
4–242
SSF69349 DC_1607
IPR041352
ATT
5–43
IPR041352
AFD02945.1
1 549
Architecture
ATT
STR
STR
ATT 4-43 | STR 44-242 | STR 325-508 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage metaG-MbCM1
[NCBI] 		1079999 Uroviricota > Caudoviricetes > Pantevenvirales > Galenevirus > Galenevirus mbcm1
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFD02945.1 [NCBI]
Genbank nucleotide accession
JN371769 [NCBI]
CDS location
range 88724 -> 90373
strand +
CDS
ATGGCAAATAGAATTCAGTTAAGAAGAGGGGGTGCCCAAGAATGGGCAAACTCAAACCCAACCCTTGCTCAAGGTGAACTTGGCATTGAACTCGACACTGGTCGATTTAAGATTGGTGATGGAGTTACTGCGTGGAACACTCTTCGGTACGAACGACCTGTCGAATCGACGTCTAATACTGCAAACACTCTTGTTCAGCGTGATGCTGATGGTAACTTCGCTGCAGGTACGGTAACTGCAACTCTTATTGGTAACTCTTCTACTGCTGCACGTCTTGCTTCAACTAGACAAATCCAAATCTCTGGTGACGTACAAGCATCTGGTGTATTTGACGGTTCACAAAACCTTAACTTAACGTCTGCTATCAGTCTGATTTCCACATTACCACATTATGATGGTACTGACACTGCAACTGGAACTTATACAAAAGTAACTCTTGATGCTAAAGGTAGAGTTACAAATGCTTCAAACCCAACAACTCTTGCAGATTATAACTTAAACGGAACTGTAGAAGGATCTTCTGCTCAACCGTATGACTTAGACCTTGTTGCTGTTGCAGGTCTTACCACTACAGGTTTGATTTCTAGAACTTCTGGTGGTGCAATGTCAACCAGAACTATTACAGGTACAGCAGGTAGAATCTCTATCAACGATGGTGGTGGTATCAATGGGAACCCCACAATCGATATTATTACAACAGCAGTTGTCCCAGGAAATTATAATACTGAATCTTTAACATCTGTCTCAGGTGTGGGATCCAGTTCAGAACCATTCGGTACTCAGACTGTAAACGCTACGAAATTTACAGATGACGACAGGGGTCGTCTAACCAGTGCTACGAATGTACCAATCGCTACTGCGACAGAGGGAAGTAAGTACGCTAACTATGGTGCAGGTACTACTTACGTTAGGTATGATATTATTCAGAATGCCTCTAAGGTATACCAAGCAATCACTGGTATTGCTGCAGGTTCAGGTGCTCCTACTCATTCTAGTGGTGATTCAGGCGGGTGGAGATATCTCGCTGCCGAGGCGACTGAACAGAAGGGACTTGCGTCCTTTGCACAGGAAGACTTTGACGTCGATGCCAATGGGCACGTTACAATCGCTGCAGTAGGTGTAGATAATAATCAATTACAAAACAATAGAATCGGTTTTGCTGATGGCAACACCGTAGAAAACTTTGAACTGGATCAAGAACTTACAGCAACTACTGGTTACAGAGGATTGAACTATCTAAATTATGTTAAGGTTAATGATACTAGTGGCAACCTACTGTTTGGCGCGAAAAATACAGGCGAGGGTGGGGCTGGTGAGGTTGATATCAATGTCCGTACCGTTATATCTGATCCTGATATTATTCTTGATGGAGCAACTGCTCAACAAATTGATAAGACTGGGGATGGAAACCTCAATATTGAACTAACTCAGAATACTGCAACTAATAGAAACTTTACTGTTGCTTCTACAAACGCAGGTTCTGGCACAAGCACACTAACATTAACAGCAGAAGAGTTGTTGAAATCGATGCATCTGCTGCTACTGGTAAAGTACACGTTGAAGATTCGAGATTCCAAGATAATTATATTGCAACTTCTAATGCTACCATGCACCTGGATCCAGGTGATGATAGAGCAATCACTGGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9acacdf80e46801ea481e6c1cce202e34bd04e9857ca180740dffda7fbfcf853
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5899
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank