Protein

View in Explore
Genbank accession
ARQ95334.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MARRFESMLRVKPRDNLGDPEYWNRRFDDIDRRISSNEDGLEAIGGLTAYVEGLALNRLDLVLAPALDKITLVSEQGFLLAHSDSVVTLDTATTQTFVIDDAAERELFAPSPYLTIAREANMTDYCFAQLVDYDKVTGQLVVQPVHIQGNPGPFDDWVIYVGTAISQAVTDILDQTIAAKNTTFGYRNDAAASAAAALADKNTVAGYRIDTLAARDAAQLAATNAQTWDPTNYALITYVDSKVASLVNSAPTTLDTLNELATALGNDANFSTTVTAALGNRLRFDADAPLNPTQQAKATANLGYGTIVYKNVATAPEIKTNSGSNAITVDNAWTAAAWINIGNSGAGTLVIDGNNGPNQVCTLTGNVTVSFINMRSGQSLNLLFIQDATGGRTVSWNANFRFPDNVAPQIYTGASAIGLIYSGVYYTNGYILGAGWKIF
Physico‐chemical
properties
protein length:439 AA
molecular weight: 47012,90850 Da
isoelectric point:4,54095
aromaticity:0,08884
hydropathy:-0,04282

Domains

Domains [InterPro]
DC_1251
STR
56–437
DC_1251
IPR058970
RBD
360–423
IPR058970
ARQ95334.1
1 439
Architecture
STR
STR 56-437 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage BDU-MI-1
[NCBI] 		1983459 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bradyrhizobium diazoefficiens
[NCBI] 		1355477 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARQ95334.1 [NCBI]
Genbank nucleotide accession
KY940711.1 [NCBI]
CDS location
range 64036 -> 65355
strand -
CDS
ATGGCTCGCCGGTTTGAATCGATGCTGAGGGTTAAGCCGAGGGATAACCTCGGCGACCCGGAATACTGGAACCGGCGCTTTGATGACATCGATCGTCGCATCTCGTCCAACGAGGACGGGCTTGAGGCGATCGGTGGCCTCACGGCCTACGTCGAAGGTCTGGCCCTGAACCGGCTGGACCTCGTGCTTGCTCCGGCACTCGACAAGATCACTTTGGTGTCCGAGCAGGGCTTCCTGCTCGCGCACTCCGACTCGGTCGTCACTCTCGACACCGCGACCACGCAGACGTTCGTTATCGATGACGCGGCTGAACGGGAGCTGTTTGCTCCGTCGCCGTATCTCACGATCGCCCGCGAAGCCAATATGACGGACTACTGCTTCGCCCAGCTTGTCGACTACGACAAGGTCACCGGGCAGCTGGTGGTTCAGCCGGTCCACATCCAGGGCAACCCCGGACCGTTCGATGACTGGGTCATCTACGTCGGTACCGCCATCAGTCAGGCTGTCACCGACATTCTCGACCAGACGATCGCTGCGAAGAACACGACGTTCGGCTACCGCAACGATGCGGCGGCGAGCGCGGCTGCTGCTTTGGCAGACAAGAACACCGTTGCCGGATACCGGATAGACACTCTGGCTGCGCGAGACGCAGCTCAGCTGGCTGCCACGAATGCGCAGACCTGGGATCCGACCAACTACGCTCTGATCACCTACGTCGACAGCAAGGTGGCAAGCCTCGTCAACAGCGCGCCGACCACGCTCGATACGCTGAATGAGCTGGCGACGGCGCTCGGCAACGACGCCAACTTCTCGACCACGGTCACCGCCGCTCTGGGCAATCGGCTGCGCTTCGACGCTGACGCTCCCCTCAACCCGACGCAGCAGGCTAAGGCCACCGCAAATCTCGGCTACGGCACGATCGTCTACAAGAACGTCGCGACCGCGCCGGAGATCAAGACGAACAGCGGATCGAACGCTATCACGGTCGACAACGCCTGGACCGCCGCCGCATGGATCAACATCGGCAACAGCGGGGCCGGCACCCTCGTCATCGACGGTAACAACGGTCCGAACCAGGTTTGCACGCTGACGGGTAACGTCACCGTGAGCTTCATCAACATGAGGAGCGGTCAGAGCCTCAACCTGCTGTTCATTCAGGACGCCACTGGTGGTCGCACCGTCAGCTGGAATGCGAACTTCCGCTTTCCGGACAACGTCGCGCCTCAGATCTACACGGGCGCAAGTGCCATCGGGCTCATCTACTCCGGCGTCTATTACACCAACGGGTATATCCTGGGAGCGGGGTGGAAGATCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f79836afba2997924483ef348c6b38e4e0d29aa33c66f6849d5eaf0aef0979f6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7383
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel bacteriophage infecting Bradyrhizobium diazoefficiens USDA110T Liu,J., Yu,H., Huang,Y., Yu,Z., Fan,G., Jin,J., Liu,X. and Wang,G. 2017-07-27 — GenBank