Protein

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Genbank accession
QGF19689.1 [GenBank]
Protein name
putative tail spike attachment adapter protein
RBP type
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MYSVQIAVSDGSLSRIALSIEYFEKDDISLYRNLSTVPMVLGDDWQWDGDAHINLLSDVPVPNGGYITVRRNTNIDRAFNIYDGGAAFTRDTLDENFKQMIYLAQEFTEGNGLTGLFFPLNMNGFKITNLGAGTDDKDAVNKGQLDGVSDRVSSLEGTFVTGTTSYPWYTITTEPTLVFSPPFLFTKAALYLNGVCQVPGLSYSVSNNQIRLATNVAPGTVVFARLGEDTDAATEGVTQAQFLALMARVEALENP
Physico‐chemical
properties
protein length:255 AA
molecular weight: 27828,81630 Da
isoelectric point:4,32467
aromaticity:0,10588
hydropathy:-0,07216

Domains

Domains [InterPro]
DC_1609
STR
1–251
DC_1609
IPR011049
STR
114–149
IPR011049 IPR008635
IPR008635
RBD
126–162
IPR008635
G3DSA:6.10.250.2040
STR
127–178
G3DSA:6.10.250.2040
QGF19689.1
1 255
Architecture
STR
STR 1-251 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA2
[NCBI] 		2608298 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19689.1 [NCBI]
Genbank nucleotide accession
MN271656 [NCBI]
CDS location
range 34991 -> 35758
strand +
CDS
ATGTATTCAGTTCAGATTGCTGTATCTGATGGTTCGCTATCCCGAATTGCTCTGAGTATTGAGTACTTCGAGAAGGACGACATTTCACTGTACCGCAATCTGTCCACTGTACCTATGGTGCTGGGCGACGATTGGCAGTGGGATGGTGATGCACACATCAACCTGTTATCCGACGTACCAGTGCCTAATGGTGGGTACATCACAGTACGTCGTAACACTAATATCGACCGAGCGTTCAACATCTACGATGGTGGTGCTGCGTTTACGCGGGACACGTTAGATGAGAACTTTAAGCAGATGATTTACCTAGCGCAAGAGTTTACTGAGGGGAACGGCCTTACGGGGTTGTTCTTCCCGCTGAACATGAACGGGTTCAAAATCACAAACCTCGGTGCTGGTACTGATGATAAGGACGCTGTTAACAAAGGTCAGTTGGATGGAGTAAGCGACAGGGTATCCAGTCTGGAAGGAACCTTCGTAACAGGTACCACCAGTTATCCGTGGTACACTATCACGACAGAGCCTACCTTGGTGTTTTCGCCGCCGTTCCTGTTTACTAAGGCAGCGTTATACCTTAATGGTGTGTGCCAAGTACCGGGTCTCAGTTACTCGGTGTCAAACAATCAGATTAGACTAGCCACTAATGTAGCCCCCGGCACTGTTGTATTTGCACGTTTAGGTGAGGACACAGACGCTGCGACGGAAGGGGTTACACAGGCACAGTTCCTAGCGCTGATGGCGCGTGTAGAGGCACTGGAGAATCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c85a5f1b17d67316bb82ff9012a1dfc1ddb11abcf2656c8f27da00657a1d2093
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8371
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M., Young,G.K., Trudgett,J., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank