Protein

View in Explore
Genbank accession
AGG54186.1 [GenBank]
Protein name
OMP1 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLLAAGSAANAGGLTHKLSSSVQLTVDAAATNVQRVGNSYTVSGNNVGTSYTGTGQGASAVTNGIGQLDISSGVSSLGTVQATQATAGESFSFSQVYTQGDTIVTSAPSVGAVSAYSNQTSTASGSAGDLAGTIDSSGTLAITAGGAGTSAVGQFVSEISILN
Physico‐chemical
properties
protein length:163 AA
molecular weight: 15577,64800 Da
isoelectric point:4,08697
aromaticity:0,04294
hydropathy:0,20307

Domains

Domains [InterPro]
IPR046285
STR
1–154
IPR046285
AGG54186.1
1 163
Architecture
STR
STR 1-154 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54186.1
1 163
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,8768
Central domain 162 161 1 0,2790
C-terminal 162 163 1 0,6846
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-161
C-terminal
162-163

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM4
[NCBI] 		536466 Uroviricota > Caudoviricetes > Pantevenvirales > Greenvirus > Greenvirus ssm4
Host Synechococcus sp. WH 8018
[NCBI] 		166322 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54186.1 [NCBI]
Genbank nucleotide accession
HQ316583 [NCBI]
CDS location
range 115943 -> 116434
strand -
CDS
ATGCTTTTGGCTGCTGGATCTGCTGCTAACGCTGGTGGATTGACGCACAAATTGAGTAGCAGTGTCCAATTAACCGTAGACGCTGCAGCAACTAACGTACAACGTGTAGGTAACTCTTACACTGTATCGGGAAACAACGTCGGCACTAGCTATACTGGCACTGGTCAAGGTGCAAGTGCAGTTACTAATGGCATTGGTCAACTAGATATCAGTTCAGGAGTGAGTTCTTTAGGTACGGTACAAGCAACTCAGGCCACCGCTGGAGAAAGTTTCAGCTTTAGCCAAGTTTACACACAAGGAGATACAATTGTGACATCAGCACCTAGTGTTGGTGCAGTAAGTGCATACAGCAATCAAACTTCAACTGCCTCAGGCAGTGCGGGCGATTTAGCTGGAACTATTGACAGTTCTGGAACTCTCGCAATTACTGCAGGTGGTGCTGGTACTAGTGCTGTTGGTCAATTTGTATCTGAAATTTCCATCCTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
391dd9dfe349e3c02df281341128e68a3c6fb321b04bab01b27ae0dd9674ace9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4209
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM4 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank