Protein

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Genbank accession
QXV74253.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MTYVSVKQLGGVISVATLETGDVVSTPAEIDTTRAIVFNQLEDNNAVCTLAAPQTSATPKLIHLTNQGDFPVTVQGVTLQPGPTYGIWWNGSAYSQIAVEGVGIVSNTQDSPSVHIGGDGSIIDPLTADVKISSALNNGLEIRSDGLYFQNVQIAPDRFVVVDTTSGSDTFDGTLTAPFKTISKAIQTVLNQGLILVVGGTYTEALQLPAGKRFVLEGIGGANDSNVVSINGIIRNDAGAAGIRFKNLTLHSPAGQGPAVEFVDAAGGMIFDNVSITSDLTNDQASVVHFSGGNSSWYVFNEGSIKGGLKVEGDNNAPVISLLHGAEKTALYINDVDATVQVSYQSYLGDITHLNGNLFLKSIAVIGNITSSANAPNLLGIHDSSLFDLDTGGWKTLTKTGTAPYTLDLKRAATNNAFSGTPLFGPNASDIHGNYAPVAYTATSDSVAGHLEGIDEALANVGGGLSAVTSTDSATVDFSGAGTGAQPLTAAVKVSSNAGNVLQAETDGLFVAAADVGLTAVSHANTDTIDITGDGTPSDPLQAEVSISTTAHNLLTKDTEGLFVIEPSPLFETVINIPYMWGAGEVIYSYKASREYTLAQGLAGWQRDVVWLDDPDSPDPDNPDPLVYPYTITIKKKNSLNVVTTIGTIDWNTGVTFPAAVQFTVGDVLYLEVNNEARFKSFALTILAQRPYTN
Physico‐chemical
properties
protein length:694 AA
molecular weight: 72559,85810 Da
isoelectric point:4,38100
aromaticity:0,07493
hydropathy:0,04251

Domains

Domains [InterPro]
DC_0915
ATT
2–344
DC_0915
IPR011050
STR
152–319
IPR011050 DC_0915
IPR012334
STR
161–340
IPR012334
IPR011459
Unmapped
166–206
IPR011459
QXV74253.1
1 694
Architecture
ATT
ATT 2-694
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV74253.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 211 211 0,9466
Central domain 212 422 212 0,8512
C-terminal 423 694 271 0,5713
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-211
Central
212-422
C-terminal
423-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph12
[NCBI] 		2836128 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV74253.1 [NCBI]
Genbank nucleotide accession
MW980064.1 [NCBI]
CDS location
range 183320 -> 185404
strand +
CDS
ATGACTTACGTCTCTGTAAAACAGCTTGGCGGTGTGATCAGTGTCGCGACTCTCGAAACCGGAGACGTGGTTTCCACGCCCGCCGAGATCGACACCACCCGCGCAATTGTCTTTAACCAGCTTGAAGACAACAATGCAGTCTGCACATTGGCCGCTCCGCAGACGAGTGCTACACCGAAGCTCATCCATCTTACCAACCAAGGCGACTTCCCGGTAACAGTGCAGGGCGTCACGCTCCAACCGGGACCGACCTACGGCATTTGGTGGAATGGTTCTGCTTATTCGCAGATTGCAGTCGAAGGCGTTGGTATTGTTTCCAACACCCAAGACAGCCCTTCCGTTCACATCGGCGGTGATGGTTCGATCATCGATCCTCTTACCGCCGATGTAAAGATTTCGTCGGCGCTGAATAACGGTCTGGAAATCCGTTCCGATGGTTTGTATTTCCAGAACGTCCAGATCGCGCCGGATCGCTTTGTTGTGGTTGATACCACTTCCGGTTCTGACACGTTCGACGGTACTCTTACCGCGCCGTTCAAGACCATCAGCAAGGCCATTCAGACGGTTCTCAACCAAGGCTTGATCTTGGTAGTAGGCGGCACCTACACCGAAGCCCTTCAACTTCCGGCTGGTAAGCGTTTCGTGCTGGAAGGCATCGGCGGCGCGAACGATAGCAATGTCGTTTCGATCAACGGTATCATCCGTAACGATGCAGGCGCGGCTGGCATCCGCTTCAAGAACCTGACCCTTCATTCGCCTGCCGGTCAAGGTCCAGCGGTTGAATTTGTCGATGCTGCCGGTGGCATGATTTTCGACAACGTGTCGATCACTTCTGATCTTACCAACGATCAGGCAAGCGTTGTGCACTTTTCCGGCGGCAACTCGTCGTGGTATGTGTTCAACGAAGGCTCGATCAAAGGCGGACTCAAGGTCGAAGGTGACAACAACGCGCCGGTAATCAGCCTGTTGCATGGTGCTGAAAAGACGGCGCTGTACATCAACGACGTTGATGCAACGGTGCAGGTTTCCTACCAGTCGTATCTCGGTGATATCACGCACTTGAACGGCAATCTCTTCCTCAAGAGCATTGCTGTGATTGGTAATATCACGTCGAGCGCCAACGCGCCGAATTTGCTTGGCATTCACGACTCGTCGCTGTTCGATCTCGATACGGGCGGCTGGAAGACGCTGACGAAAACCGGCACGGCTCCCTACACGCTCGATCTGAAACGCGCAGCTACCAACAACGCGTTTAGCGGTACGCCGCTGTTCGGCCCGAACGCATCTGATATCCACGGCAACTATGCGCCGGTTGCCTACACAGCTACCAGCGATTCAGTCGCCGGTCACTTGGAAGGTATTGACGAGGCGCTGGCGAACGTGGGTGGCGGTCTATCGGCTGTTACCTCGACGGATAGCGCCACGGTTGACTTCTCCGGTGCCGGTACGGGCGCACAGCCTCTTACCGCTGCCGTCAAGGTGTCGTCCAACGCGGGCAACGTTCTGCAAGCAGAAACGGACGGTCTGTTCGTTGCGGCTGCTGACGTAGGTCTTACCGCCGTCTCGCACGCAAACACCGACACGATTGATATTACCGGCGACGGTACGCCATCCGATCCGTTGCAGGCCGAAGTGTCGATTTCCACGACGGCGCACAACCTTCTTACCAAAGACACGGAAGGGCTGTTCGTTATCGAACCGTCGCCGTTGTTTGAGACGGTCATCAACATCCCCTACATGTGGGGTGCTGGCGAAGTGATCTACTCCTACAAAGCTTCGCGCGAATATACCCTTGCGCAAGGTTTGGCAGGTTGGCAAAGAGACGTTGTTTGGTTGGATGATCCGGATTCTCCGGACCCTGACAACCCCGATCCGCTGGTCTACCCGTACACTATCACCATCAAGAAAAAGAACTCGCTCAACGTCGTTACTACCATCGGAACAATAGACTGGAACACTGGCGTCACTTTCCCTGCCGCTGTCCAGTTCACGGTTGGCGATGTGTTGTATCTGGAAGTCAACAATGAAGCGCGGTTCAAGTCCTTCGCTCTTACCATTCTGGCGCAGCGACCGTACACCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3873b42eb80adbe41dd132ae92821f0fec0cfc2e341021662a6b8e004c296084
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7136
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity of Double-Stranded DNA Phages in the Symbiotic Bacterium Rhizobium Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Gonzalez,V. 2011 — GenBank