Protein

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Genbank accession
AXG67150.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MVEKVDISLVKANASGPVVATEGGITVDTTQDDSQLSGAFDAVTGLLSINIPTIGKLQISGLPTIHSIGYGPAGGVGPAGRDGIDGLMGSDGRRGTDGCPGPRGNDGLQGKQGYVGNRGPAGPTGPTGPTGAPGNPGTVQVFVQDTDPAIDNEIAPGAIWVRP
Physico‐chemical
properties
protein length:163 AA
molecular weight: 16094,69000 Da
isoelectric point:4,48519
aromaticity:0,03067
hydropathy:-0,20000

Domains

Domains [InterPro]
DC_1829
ATT
1–75
DC_1829 IPR008160
PTHR24637
Unmapped
70–137
PTHR24637
IPR008160
STR
88–137
IPR008160
AXG67150.1
1 163
Architecture
ATT
STR
ATT 1-75 | STR 76-137 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_AD1
[NCBI] 		2283029 Uroviricota > Caudoviricetes > Alexandravirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG67150.1 [NCBI]
Genbank nucleotide accession
MH460463.1 [NCBI]
CDS location
range 71671 -> 72162
strand -
CDS
GTGGTAGAAAAAGTTGATATATCGCTAGTCAAGGCCAATGCTTCTGGTCCTGTCGTAGCGACCGAAGGGGGAATCACAGTTGACACTACGCAAGACGATAGCCAACTTAGCGGGGCATTTGATGCGGTTACAGGTCTTCTGTCTATCAACATCCCTACTATCGGCAAGCTCCAGATATCTGGGCTACCTACTATTCATAGCATCGGTTACGGTCCTGCCGGCGGCGTTGGGCCTGCTGGTCGTGACGGTATTGACGGTCTCATGGGTAGCGATGGTCGTCGTGGTACTGATGGCTGTCCTGGTCCTCGTGGTAATGATGGACTACAGGGGAAGCAAGGTTACGTAGGTAATCGTGGTCCTGCTGGTCCGACAGGCCCTACTGGCCCAACTGGTGCCCCAGGTAACCCAGGTACAGTACAGGTGTTCGTGCAAGACACCGACCCTGCTATTGATAATGAGATTGCGCCAGGTGCCATCTGGGTAAGACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c9cb4c44c5aa03bb21b5a4cbc10f2282e62abcf1f4d2cd9f359186566611df8b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank