Protein

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Genbank accession
URQ03176.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,89
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSSINIPGFGYSAVPESPNDGQLYGRRNATWELIALSDGVLEAPADGQEYVRKDFQWVLPTYPTYTASNISLTSSLFASTNVHDALEELYYENPLNVVLVRSEDDLPAPQLINGVLTHKLEEKEYVLDGNVTIANPLGFPGAGNSATIKAINRSVLTYTGTDAMFYDLGAQGNIEIAGQTEFQAPNADMFNLISGAGGFSFQSRYADRFNNCDRLGEVYCGGLSTIVFNNGTFRNFNQGLVVHDPGFFEVNTFFVFGNNQAGCTYFTVQGTSSTGSINIDTLTCSIGTNETIFNFNPNIQATIDTINVRNCTLRGPLNGTIFAPGSLTPRDYKFESIGNTLIGNTVHGGLMSLTNNTTPTVVGAINTPTLAAGTWDIQETSHFEASTTGRLTSQVIRTISSSVDASISVEPATGNGVIIRCYLAKNGVPIVASAKTTTVDNGDPANLAISWQLDISEGDYIEIFVENRTSGAAVIVTDATLRIP
Physico‐chemical
properties
protein length:484 AA
molecular weight: 51920,12720 Da
isoelectric point:4,46200
aromaticity:0,09298
hydropathy:-0,06240

Domains

Domains [InterPro]
G3DSA:6.20.230.10
ATT
13–35
G3DSA:6.20.230.10 G3DSA:6.20.230.10
DC_0529
STR
56–484
DC_0529
URQ03176.1
1 484
Architecture
ATT
ATT
STR
ATT 13-35 | ATT 39-61 | STR 62-484
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ03176.1
1 484
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,8939
Central domain 118 345 229 0,9779
C-terminal 346 484 138 0,9908
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-345
C-terminal
346-484

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA8
[NCBI] 		2938951 No lineage information
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03176.1 [NCBI]
Genbank nucleotide accession
ON190024.1 [NCBI]
CDS location
range 125994 -> 127448
strand +
CDS
ATGTCAAGTATTAATATACCTGGCTTCGGCTACTCGGCTGTACCTGAATCGCCAAACGATGGGCAGCTATACGGTAGACGAAATGCCACATGGGAGTTAATTGCTCTCTCAGACGGTGTGTTAGAAGCACCCGCAGACGGACAAGAATATGTTCGAAAAGATTTTCAATGGGTTTTGCCAACTTACCCAACTTATACTGCAAGTAATATCAGCCTAACGTCGTCGTTATTCGCGTCAACGAATGTTCACGATGCGCTTGAGGAACTTTACTACGAAAACCCACTCAATGTCGTGCTTGTTCGCAGCGAAGATGATCTGCCAGCACCGCAACTTATCAATGGTGTGTTGACGCACAAACTCGAAGAAAAGGAATATGTCCTTGATGGTAATGTTACGATTGCAAATCCACTAGGGTTTCCGGGAGCGGGGAACAGTGCAACGATTAAAGCGATAAACCGTTCGGTGTTGACTTATACTGGAACCGATGCCATGTTCTATGATCTAGGGGCACAAGGAAATATTGAAATCGCTGGTCAGACTGAGTTCCAAGCCCCGAATGCCGACATGTTCAATTTGATTTCTGGTGCGGGTGGTTTCTCATTTCAGTCACGGTATGCTGACCGATTCAATAACTGTGACCGTCTAGGTGAAGTTTACTGCGGCGGATTATCTACGATTGTGTTCAATAACGGTACATTCAGAAACTTCAATCAAGGGCTTGTTGTTCACGACCCGGGCTTTTTTGAAGTAAACACGTTCTTCGTATTCGGAAACAATCAAGCCGGTTGCACGTACTTTACAGTACAAGGAACATCATCAACTGGCTCGATTAACATCGACACATTGACATGTTCTATCGGGACAAATGAGACAATTTTCAATTTTAACCCGAATATCCAAGCAACTATTGATACGATCAACGTTCGAAACTGTACACTACGCGGTCCGTTGAATGGTACGATTTTCGCACCGGGAAGTTTGACACCACGAGATTACAAGTTTGAAAGTATCGGCAACACATTAATCGGCAACACTGTACATGGCGGGTTAATGTCACTTACGAATAACACCACTCCTACAGTAGTGGGTGCGATCAACACTCCAACTCTAGCAGCGGGAACATGGGATATACAAGAAACATCACATTTCGAGGCATCTACAACGGGTAGACTTACATCCCAAGTTATCAGAACAATTTCGTCTAGTGTGGATGCGTCAATAAGCGTCGAGCCTGCTACGGGTAACGGTGTTATCATTCGCTGTTATCTTGCCAAGAATGGCGTGCCTATCGTCGCTAGTGCGAAAACAACTACGGTTGATAATGGAGACCCAGCAAACTTGGCAATATCATGGCAACTTGATATTTCTGAAGGCGACTACATTGAAATATTCGTCGAGAATAGAACGAGTGGCGCAGCGGTTATTGTCACAGATGCTACGTTACGCATCCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f3e262d495c00afc82fe3d47856ea31185283e826b72863f539f32e1058d8b9e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7937
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a broad-host-range bacteriophage that prevents Vibrio alginolyticus infections in juvenile turbots farming He,Z. 2023-05-12 — GenBank