Protein

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Genbank accession
YP_009789380.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MYINNGRINYNNEYGYRRGIYREPFYSDNADYNTNSKSYYDYLARFNGFIFELCDFVNGLADDIQKMKDTYEALTLSNTDVTYTVGQKGDFDTLNHCFEHIEDLIVQPKSIRVILLKDYMMREQLFLRDKRYNHITITSENDIVEAYETELNRQVEIKTNPIFRVKPLFYGINSTFPKIDFKLQNKDFSDTINCGFLMDNTTFEMTERGGSTHFNFIGLCGVNGSHIQTNYCDFSYNGNREQLEEYNKDQNMYGDGLRIFNSSLTGNYMTVNRCGEIGIHFSHGASGYIDFTEARFNGHHGLMVTTGSQASARNCKITDTIDDNVVSYASSDIDLRSSDCSNSQTTYGVIATRSSNINFDKGIANGCGASGIMANRGCSIDATGATASRNKWHGVIASNNSKVDFTSGNANENGLDGIQCTHGSTVQARLSTTNGNKRNGVLAYAGDVYCQEINCDGNGRRGLEATRGGYVAAYGAKVSRSKDDNVLAYGSMISINEALIERAGRNGIEATRGGQIFADRITITGSGDFGILAYASKVFAEASNISGTKNEPVYATRGGEVTCFGSNISSNKTVYNVYNGSRIFTDKDHGYSTNVDPQTLSSKGLIILG
Physico‐chemical
properties
protein length:609 AA
molecular weight: 67322,63330 Da
isoelectric point:5,63328
aromaticity:0,10509
hydropathy:-0,47964

Domains

Domains [InterPro]
DC_1478
STR
4–609
DC_1478
IPR012332
STR
220–449
IPR012332
IPR039448
ENZ
301–448
IPR039448
YP_009789380.1
1 609
Architecture
STR
STR 4-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009789380.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1702
Central domain 11 587 578 0,9195
C-terminal 588 609 21 0,5623
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-587
C-terminal
588-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Andhra
[NCBI] 		1958907 No lineage information
Host Staphylococcus epidermidis RP62A
[NCBI] 		176279 Bacillota > Bacilli > Caryophanales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789380.1 [NCBI]
Genbank nucleotide accession
NC_047813.1 [NCBI]
CDS location
range 12796 -> 14625
strand -
CDS
ATGTATATAAATAACGGTCGAATTAATTATAATAATGAATACGGGTATCGTCGTGGCATATATCGTGAACCATTTTACAGTGATAATGCAGATTATAATACCAATTCAAAATCATATTATGATTATTTAGCGCGATTTAATGGTTTTATTTTTGAATTATGTGATTTTGTCAATGGTTTAGCTGATGATATTCAAAAAATGAAAGACACATACGAGGCATTAACATTATCAAATACAGATGTAACTTATACAGTCGGACAAAAAGGTGATTTTGATACATTGAATCATTGTTTTGAACATATTGAAGATTTAATTGTACAACCAAAATCTATACGTGTGATATTACTTAAAGATTACATGATGCGTGAACAATTATTCTTACGTGATAAACGTTATAATCATATTACGATTACATCAGAAAATGATATTGTTGAAGCTTATGAAACTGAATTAAACCGTCAAGTTGAAATAAAAACAAATCCAATTTTTAGAGTAAAACCACTATTTTATGGGATTAATTCAACATTCCCTAAAATTGATTTTAAACTACAAAATAAAGATTTTTCAGATACGATTAATTGTGGTTTCTTAATGGATAATACAACGTTTGAAATGACTGAACGTGGAGGATCTACACACTTTAATTTTATTGGTTTATGTGGTGTCAATGGTTCACATATTCAAACCAACTATTGTGATTTTTCGTACAATGGTAATCGTGAACAATTAGAAGAATATAATAAAGACCAAAATATGTATGGTGACGGATTAAGAATATTTAATTCATCATTAACAGGTAATTATATGACAGTCAATCGTTGTGGTGAAATTGGAATACACTTCTCACATGGTGCAAGTGGTTATATTGATTTTACCGAAGCAAGATTTAACGGACACCATGGTTTAATGGTGACAACTGGTTCACAAGCGAGTGCAAGAAACTGTAAAATCACTGATACAATTGATGATAATGTTGTAAGTTATGCGTCAAGTGATATTGATTTAAGAAGTAGTGATTGTTCAAATTCACAAACAACATACGGTGTCATTGCGACACGTTCATCAAACATTAACTTTGATAAAGGGATTGCAAATGGTTGTGGTGCAAGTGGTATTATGGCAAACAGGGGTTGTTCTATTGACGCCACAGGTGCAACTGCTTCACGTAATAAATGGCATGGTGTCATAGCAAGTAACAATTCAAAAGTTGATTTCACAAGTGGTAATGCAAATGAAAATGGACTTGACGGAATCCAATGTACACATGGTTCAACTGTACAAGCAAGATTATCAACAACCAATGGTAATAAACGTAATGGTGTACTTGCCTACGCAGGTGATGTGTATTGTCAAGAAATTAATTGTGACGGTAACGGTCGTCGTGGATTAGAAGCTACACGTGGCGGATATGTCGCTGCATATGGTGCGAAAGTATCACGTTCAAAAGATGATAACGTATTGGCATATGGTTCAATGATTTCTATTAATGAAGCATTGATTGAACGTGCAGGGCGTAACGGTATTGAAGCCACACGTGGAGGACAAATATTTGCAGATAGAATTACAATCACAGGTAGTGGTGATTTTGGTATTTTAGCGTATGCGTCTAAAGTGTTTGCCGAAGCGTCAAATATTAGTGGTACTAAAAATGAACCTGTTTATGCAACACGTGGTGGAGAGGTAACATGCTTTGGTTCAAATATTTCAAGTAACAAAACAGTTTATAACGTGTATAATGGTAGTAGGATATTTACAGATAAAGACCATGGATATTCTACCAATGTTGATCCTCAAACATTATCAAGTAAAGGGTTGATTATTCTAGGGTAG

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
A novel Staphylococcus podophage encodes a unique lysin with unusual modular design Cater,K., Sree Dandu,V., Bari,S.M.N., Lackey,K., Everett,G.F.K. and Hatoum-Aslan,A. 2017 — GenBank