Protein

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Genbank accession
XFA12811.1 [GenBank]
Protein name
EPS depolymerase Dpo31
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTVPTNDNREQYAGNGATTVFPYAFRIFESSDLEVYLTDEDGDQALLIEGTDYTVSGAGDEEGGEITFPVSGDPLDDGETLTILRVIDITQETDLKNQGAYYPEVVEDEFDRSRMIDQQQQEQLDRALIKTETGDRWEGQGVPAKNFAMSDPVEDTDLPTVRWTKDYVTQMAEGITGDIGAYTVVAPTSGDEKRLDEWMDDIQRPDDSLVVADGGTEARSLSERFADSASYQDYGIAGDGTTNDTAAFAALESDRSSDAIELHGNTYLVDEIPNGNAYRDAVWSLDGEDLSISEYGGLVTGTPTTGAFEPAYTGGVNNTPTTSGRTNKHTRAILASQNCRADFARSACVASIYSWAYGNVSGNFASRQSIAGAPQTVNIGSEEGQALGFQSGNYTTQFCRAEGSTTFNIGSDDCAASGAHSGTISSLESYAGRGHDFRGTPVFDDGVLVDITIDDAGAGYVPGSDVMYLQNRQFGNTTDAVITYTVDGTGGVSAITITDGGSGYSGIVAARIDTFGDYSLVMASARSKIEDQFCAAIASDNARVRGRESAVIASDGGVVNEDNSVVIGSVDSTSNGARSGIYTGSGCETTGAGAVVIGGVNAKASNDGAIVMGRGVDSEFARSLVFGDGGSGAAASTAGRKFQVTAAGNVTAAGTITGSTTYADYAEYFENSARGVIPLGVIVTLDGRKVRPASAGDDIIGVVSGTAILAAGDSQFHWGGRYLAGEFGELLYHDVDVDGKIERQPVENPEYDPSVPNVPRSQRPEEWSCIGLVGQLHVRVSSDVAAGDRVAAGDGGIGVPGDNGMICMEIKQAYDSGKGYAVALCLHK
Physico‐chemical
properties
protein length:828 AA
molecular weight: 86794,42670 Da
isoelectric point:4,22407
aromaticity:0,07729
hydropathy:-0,28961

Domains

Domains [InterPro]
DC_0055
ATT
7–220
DC_0055 G3DSA:2.160.10.20 G3DSA:2.40.300.10
DC_2249
ATT
165–357
DC_2249 DC_1692 IPR021865
G3DSA:2.40.300.10
RBD
664–826
G3DSA:2.40.300.10
G3DSA:4.10.80.40
RBD
717–755
G3DSA:4.10.80.40
XFA12811.1
1 828
Architecture
ATT
RBD
STR
RBD
ATT 7-357 | RBD 520-531 | STR 532-596 | RBD 597-826 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XFA12811.1
1 828
Domain Start End Length (AA) Confidence
N-terminal 1 245 245 0,9938
Central domain 246 625 381 0,9166
C-terminal 626 828 202 0,9294
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-245
Central
246-625
C-terminal
626-828

Taxonomy

  Name Taxonomy ID Lineage
Phage Cobetia phage Carin1
[NCBI] 		3241087 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XFA12811.1 [NCBI]
Genbank nucleotide accession
PQ119497 [NCBI]
CDS location
range 14332 -> 16818
strand -
CDS
ATGACCGTCCCGACAAATGACAATCGTGAGCAGTACGCTGGCAACGGGGCCACTACGGTATTCCCGTATGCCTTCCGCATTTTCGAGTCGTCAGATCTTGAGGTCTACTTGACTGACGAGGATGGCGACCAGGCGCTTCTCATTGAAGGAACCGACTACACGGTGAGCGGTGCCGGCGATGAGGAGGGCGGCGAGATCACGTTCCCGGTATCCGGCGACCCATTGGATGATGGCGAGACGCTGACCATCCTGCGAGTGATCGACATCACGCAAGAAACCGACCTGAAGAACCAGGGCGCCTATTACCCTGAAGTGGTCGAGGATGAGTTCGATCGTTCTCGCATGATCGATCAGCAGCAGCAGGAGCAGCTTGATCGCGCCTTGATCAAGACTGAGACGGGCGACAGGTGGGAAGGGCAGGGCGTGCCGGCGAAGAACTTCGCCATGTCTGATCCTGTTGAAGACACCGACCTTCCAACTGTTCGCTGGACGAAGGATTACGTCACGCAGATGGCGGAGGGCATCACCGGTGACATCGGCGCTTACACTGTCGTGGCTCCGACATCAGGCGACGAGAAGCGGCTTGATGAGTGGATGGATGACATCCAACGGCCTGATGACTCCTTGGTCGTCGCTGATGGCGGCACGGAAGCCAGGAGTCTGAGCGAGCGATTCGCCGACTCCGCCAGCTACCAGGACTACGGCATTGCCGGTGACGGCACGACCAACGACACGGCAGCCTTCGCGGCGCTTGAGTCTGATCGCTCGAGTGACGCCATAGAGCTGCATGGCAACACCTATCTCGTGGACGAAATCCCGAACGGAAACGCTTACCGTGATGCCGTCTGGTCTCTCGACGGCGAAGATCTCTCTATCAGTGAGTATGGCGGCCTGGTGACAGGCACGCCGACAACTGGCGCATTTGAGCCCGCCTATACGGGTGGCGTAAACAACACGCCCACCACCAGCGGGCGCACAAACAAGCATACCCGCGCGATCCTCGCCAGCCAGAATTGCCGTGCCGACTTCGCCCGATCTGCCTGTGTTGCTTCCATCTACTCGTGGGCATACGGCAACGTCTCCGGCAACTTCGCCAGCCGCCAATCGATCGCGGGCGCCCCCCAGACCGTCAACATCGGAAGCGAGGAGGGCCAGGCCCTCGGCTTCCAATCGGGTAACTACACCACGCAATTCTGTCGTGCCGAGGGGTCTACCACCTTCAATATTGGATCGGACGACTGCGCAGCATCTGGCGCACATTCCGGCACCATCTCGTCCCTAGAGAGCTATGCTGGCCGTGGGCATGACTTCCGTGGCACTCCGGTGTTCGATGACGGCGTCTTGGTGGATATCACCATCGACGACGCTGGTGCAGGCTACGTGCCGGGCAGCGATGTCATGTACCTTCAGAATCGCCAGTTCGGGAACACGACGGATGCCGTGATTACCTATACAGTCGACGGCACTGGCGGCGTTTCAGCCATCACTATCACTGACGGCGGATCAGGGTATTCTGGCATTGTTGCTGCACGTATCGATACCTTTGGGGACTACTCGCTGGTAATGGCCTCTGCACGCTCAAAGATCGAGGATCAGTTCTGTGCCGCAATCGCCAGTGATAACGCTCGCGTCCGTGGTCGCGAGTCGGCTGTCATCGCCTCTGACGGCGGCGTGGTTAATGAAGACAACAGCGTTGTCATTGGCTCTGTCGACTCAACATCGAATGGCGCGCGCAGCGGTATCTATACCGGCTCCGGCTGCGAGACAACTGGCGCAGGCGCCGTTGTTATTGGCGGCGTGAATGCAAAGGCTTCCAATGACGGCGCAATCGTTATGGGGCGAGGTGTCGATAGCGAGTTCGCGCGCAGCTTGGTGTTCGGCGATGGCGGCTCCGGTGCGGCGGCGTCAACTGCCGGGCGCAAGTTTCAGGTCACTGCAGCTGGCAACGTGACCGCCGCGGGAACCATCACCGGCTCTACCACTTACGCGGACTATGCCGAGTATTTCGAGAACAGCGCGCGCGGCGTTATCCCCCTGGGGGTGATTGTCACGCTTGATGGTCGGAAGGTTCGCCCAGCCTCTGCTGGCGACGACATCATCGGAGTGGTTTCAGGCACGGCCATCTTGGCGGCGGGCGATTCTCAGTTCCACTGGGGTGGCCGCTACCTGGCTGGCGAGTTTGGGGAGCTGCTGTATCACGATGTCGATGTTGACGGGAAGATTGAGCGTCAGCCGGTAGAGAATCCCGAGTACGATCCATCAGTCCCCAACGTGCCGCGCAGCCAGCGCCCAGAAGAATGGTCTTGCATTGGCCTGGTTGGCCAGCTGCATGTTCGGGTGTCGAGCGACGTGGCTGCTGGCGATCGGGTGGCGGCTGGCGATGGCGGTATCGGCGTACCCGGTGACAACGGGATGATCTGCATGGAGATCAAGCAGGCGTATGACTCCGGCAAGGGCTATGCAGTAGCGCTTTGCCTGCACAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
16f2bcca098f6aa2c520cc922b002c403b03a0d3cffd970b434dedfe3b5905a8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3049
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus Sirigu,S., Roret,T., Mocaer,P.-Y., Jouanneau,D., Legrand,P., Baudoux,A.-C. and Czjzek,M. 2003-11 — GenBank