Protein

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Genbank accession
XMN71906.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,65
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MEFIVIQGDKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYDLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFAVGDEVTLLDIALPEQYITNAENKLFEEGQKEYEKQSVNNLKYNLELDPLYLQQIGASTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRRNYLNGYRNLQELRESVFDVEGYFDPTHIKPESIEANMLSVGAKSQQFALENISLNPNIEGNPARTFISGGKLIHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIKFDSRSDYYYFLCYLLYTPKDGKREAESMYGNVFMHGGQITAGRIKSLNGQTYFDLDNGEIAGTIKFKSGNGYAEVGSAIQQAVDAVSVGGRNLVRESNVFRNGISADGIGSNITSEGYLRVISSISNNNWHTRWYSRTDEIEEQMTEGEAFTITFWVKRLSGYGKPTIYLKDGMGYFHLNGELNNSEFKPLSYTGTWKKAESLHPHLGWAPANGEFIIKCWKIEKGNKATDWTPAPEDVQAEINAVKAKADQLDNLGTMAWQNSVEKAMLGSTVVQGGYIKTELLNASAIVSNGGGATTSQLNSAISSIVVGGRNYLRGSQKGYGMFNNNGRTLGLTQGEENGVRWVSGASVNNGNFYISTYFHLLNNISVFTEDLTGQETIQSMEVKPTHDMYIGLWENNRKFCPANVWTKIENSPYNNTRFIGIYAIWNNDGSVPATAKIYHRNWKLEKGNKATDWTPAPEDLDTLFANLQQGISNMQTSLSDVKNKTDNFSSIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGSNYANKNNAPFRVLDNGKMIAQDADITGRITATGGNIGEWEINGSSFRSSSIGSNDSWAQYSSYAFFSPETFLIRKNGSERGETKEVMMGITSSISTGSEGATAAIKSNIKKTQYDFDRDNVALRLEAKNGVTNTALDILNGDIRVGGEVGYTGELFLGGVWLTIRKGIITNYS
Physico‐chemical
properties
protein length:1335 AA
molecular weight: 149468,28490 Da
isoelectric point:5,39649
aromaticity:0,10637
hydropathy:-0,47303

Domains

Domains [InterPro]
DC_1026
ATT
1–192
DC_1026 DC_1956 DC_0279
IPR007119
Unmapped
135–260
IPR007119 DC_2057
XMN71906.1
1 1335
Architecture
ATT
STR
STR
ATT 1-192 | STR 356-569 | STR 620-1105 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMN71906.1
1 1335
Domain Start End Length (AA) Confidence
N-terminal 1 729 729 0,9357
Central domain 730 939 211 0,4903
C-terminal 940 1335 395 0,2918
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-729
Central
730-939
C-terminal
940-1335

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage PJO17
[NCBI] 		3390499 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella sp.
[NCBI] 		2382126 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMN71906.1 [NCBI]
Genbank nucleotide accession
PQ820059 [NCBI]
CDS location
range 21012 -> 25019
strand +
CDS
ATGGAGTTTATAGTCATACAAGGAGATAAGACCCTTAACCTTAATAATAGAAAACCTTTATGTTCGGTTACCAAAGCCGAACATAGACAGTCTTTGTTATCAGAAGATGTAATAAATATTACTGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACTATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATGATTTAGTTTTTGAGGGCGTACAGTATCTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTGGGTGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATATGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGAAAATGCGAATGATAATGTGGTTACTCGGCTTTATGTTTTCGGTTCAACGAATAATATCAAAAGTGGATACCGGGATTATTCACAGCGTTTGCGGTTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATGCTAAGGTAAAATTGTTCGGCTTAAAAGAGGGCGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAGGTTTCTAATATGGACTTTGACCTGAACGAAACTGACAGCAACGGAACAAAGTATTTATTAAACGATACTCCCGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGATATGAATTTGAGTTGCTTAAAAACGGAGGATATAACCACGCTACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCTGTGTTTTCATTTGCGGTTGGAGATGAGGTTACCTTGTTGGATATTGCTCTACCTGAACAGTACATTACTAATGCCGAAAACAAGCTCTTCGAAGAGGGACAAAAGGAATACGAAAAACAGTCGGTAAACAATCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTTCAACAGATAGGGGCTAGTACATCTATTTTCTTTAAAATAGGGGATTATATCCGTGTGATAGATGAGCCTCTTAAAATAGACAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGATACTTACGAAATCAGTTTTGTAGCAAGTCTGCTTACCGATATTAAAGATACCAAAACGGTTATAAAAACGCAGGAGCAAATTAATAGACGAAACTATTTAAACGGTTATCGTAACCTGCAAGAGCTTCGAGAAAGTGTCTTTGATGTAGAAGGATACTTTGACCCTACACATATCAAGCCAGAGAGTATAGAAGCCAATATGCTTTCGGTTGGAGCAAAGAGTCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAATATAGAGGGTAATCCTGCAAGAACATTTATTAGCGGTGGGAAATTGATTCATTTTTCCTTAGAAGACGATATTAGAGAATGGAACATATTGCCATACAGCCGTAATGACCTGTTAAATCAAGTTTACTATGTCTATGCAAAATGCTCAAGAGGGAATAGTATGGGGGTGTGGCATATTACCACCGAGCAAATAAAATTTGATAGTCGGTCAGATTATTATTACTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAATCAATGTACGGTAATGTGTTTATGCACGGAGGGCAAATAACGGCAGGAAGAATTAAATCTCTCAATGGTCAAACCTATTTTGATTTAGACAATGGGGAAATAGCAGGAACGATTAAGTTTAAAAGCGGTAATGGTTATGCGGAAGTTGGGAGTGCTATACAACAAGCGGTGGATGCGGTAAGTGTAGGAGGTAGAAATTTAGTGAGAGAATCCAATGTTTTTAGAAATGGTATATCGGCGGACGGAATAGGTAGTAATATAACTTCAGAAGGATACTTGAGGGTTATTAGCTCAATTTCAAATAACAATTGGCATACAAGATGGTATTCAAGAACAGATGAAATAGAGGAGCAAATGACAGAAGGCGAAGCCTTCACTATTACCTTTTGGGTGAAAAGGTTGAGTGGCTATGGCAAGCCTACTATTTACCTGAAAGATGGAATGGGTTACTTTCATCTAAATGGCGAATTAAACAACTCCGAATTCAAGCCTCTAAGCTATACAGGAACTTGGAAAAAAGCCGAATCATTACACCCTCATTTAGGTTGGGCACCTGCAAATGGAGAATTTATCATTAAATGTTGGAAAATTGAAAAAGGTAACAAAGCAACAGATTGGACACCCGCTCCCGAAGATGTACAGGCAGAAATTAACGCTGTAAAAGCGAAAGCCGACCAATTGGATAACCTTGGTACAATGGCGTGGCAGAACTCGGTAGAAAAAGCGATGTTGGGTAGTACGGTAGTACAAGGGGGGTATATCAAAACAGAACTCTTAAACGCTTCGGCAATAGTGAGTAACGGCGGAGGGGCAACAACCTCACAATTGAATAGTGCCATCAGTTCAATAGTAGTTGGTGGTAGAAATTACCTTAGGGGTTCTCAAAAAGGATACGGAATGTTCAACAACAACGGAAGAACATTGGGTTTAACACAAGGAGAGGAAAATGGAGTGAGATGGGTTTCTGGAGCAAGTGTGAATAATGGTAATTTTTATATTTCTACCTATTTTCATTTACTCAATAATATAAGTGTTTTCACGGAAGACCTCACAGGGCAGGAAACTATCCAATCAATGGAAGTGAAGCCCACTCACGATATGTATATAGGTCTTTGGGAGAATAATAGAAAATTTTGTCCTGCGAATGTTTGGACGAAGATAGAAAATTCTCCATATAACAACACTCGTTTTATAGGCATATATGCGATATGGAATAATGACGGAAGTGTTCCTGCAACTGCAAAAATTTACCACAGAAATTGGAAGTTAGAGAAAGGTAACAAAGCTACCGATTGGACGCCTGCACCAGAGGATTTGGACACACTATTTGCTAACCTGCAACAAGGGATAAGCAATATGCAAACCTCTTTATCTGATGTAAAGAATAAGACAGACAACTTCTCCTCTATACAAGGCGGATTGATGATGGCTAACTTGATGTCAGTCGGAAGCAACCAAGCTAATCAAAACGCTTTTATTTCGGGAATAACCGACGAGGGAGCAATGAGCGTGAGATTTGGAGCAGGGTCTAACTATGCAAATAAAAATAATGCTCCGTTTAGGGTACTGGATAACGGAAAGATGATTGCCCAAGATGCGGATATTACAGGGAGAATAACAGCCACAGGTGGAAATATAGGAGAATGGGAAATAAACGGCTCTTCTTTTAGGTCTTCTAGTATTGGAAGCAACGACTCGTGGGCTCAATATTCGAGTTACGCATTTTTTTCTCCAGAAACTTTTTTAATCAGAAAAAATGGCTCGGAGCGAGGAGAAACTAAAGAAGTGATGATGGGTATTACATCTAGTATATCCACGGGGTCAGAAGGAGCTACTGCTGCAATAAAAAGCAACATAAAAAAAACTCAATACGACTTTGACAGAGATAATGTGGCACTAAGACTAGAGGCTAAAAATGGGGTTACAAATACCGCTTTAGATATTTTGAATGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGAGAATTATTTTTGGGGGGAGTATGGCTTACCATTAGAAAAGGTATAATAACAAATTATTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9716fcb4ed9289b88bfbb292eb7ab6741f74f9c533f22f0730665a5292c4dfef
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50