Protein

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Genbank accession
AMR57974.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MDLIKYDMTNIWAVAGDVVAPEVAKIRQGWGVEVVPRQWWNWFENRQDNNIAYILQKGIPEWDSTTEYIINKSYVQRNGITYKCTQTGTNSDPVSLVGWVKAFVESTPYLEKVKNTQLVNSSIPAINSSGDASYALYGEVGLQSLVASTQLQGRNAIQAQQASSNLSALSGVTASTNGLPYFTSTTAMGIATLTSFGRSFISANDSASARSLLGLGSSATLNVGTTANTVVAGDDPRITGAMQRGNNLADLLNIGSARANLGLGTAAVQNITTTPTDTTGGRLLKVGDFGIGAISGISVPDANAISATGVYAIQNNTTNLPSGVGAGGTIFNQIWDSNSSQQILMFGSKLWIRTKATSWGNWQEVYTTSNSNALASQVQASLQPALDLKVNRSGDAMTGSLTLPSMEIGSGSQQGYIDFHSSNTNNDYDSRIVSSLGNSTTGQGALNYIAAGGHYFTGLINGTATVAQSLTGNIGIGQVNSLQAQLDGKMSVSGGGNPAFSSSRFSGPWSGTGGAAGIQGLNVGWNSGEASGFSGEANFVCNRGSGTGGFTFRCINANNTSGGPVTTISYDGSMYVPGRLTSAGDVHVGGSFIDTSGNINGSMWGGYLSNYLSSFYLTIGNLANNIAQMGTGGIGTYAFLVNTSGSTVAAGQNLSSGLSYASTTSNGGASTDGGTWRAMGFGVNNGATLWLRVA
Physico‐chemical
properties
protein length:694 AA
molecular weight: 71751,38320 Da
isoelectric point:5,51329
aromaticity:0,08357
hydropathy:-0,09856

Domains

Domains [InterPro]
DC_0043
STR
1–240
DC_0043 DC_1924
DC_1093
STR
232–321
DC_1093 G3DSA:6.20.70.20
AMR57974.1
1 694
Architecture
STR
RBD
STR 1-321 | RBD 512-694
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMR57974.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 429 429 0,7633
Central domain 430 628 200 0,2531
C-terminal 629 694 65 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-429
Central
430-628
C-terminal
629-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PsyM_KIL5
[NCBI] 		1777070 Uroviricota > Caudoviricetes > Vandenendeviridae > Flaumdravirus > Flaumdravirus KIL4
Host Pseudomonas syringae pv. porri
[NCBI] 		83964 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMR57974.1 [NCBI]
Genbank nucleotide accession
KU130130.1 [NCBI]
CDS location
range 41871 -> 43955
strand +
CDS
ATGGACTTGATTAAATACGATATGACGAATATCTGGGCAGTGGCCGGGGACGTTGTTGCCCCTGAAGTCGCCAAAATTCGTCAAGGTTGGGGTGTAGAGGTTGTTCCTCGTCAATGGTGGAACTGGTTCGAAAATCGCCAAGACAACAACATTGCCTACATACTACAAAAAGGTATCCCTGAGTGGGATTCCACAACTGAGTACATCATTAATAAGAGCTATGTGCAGAGGAACGGTATCACTTACAAATGTACCCAAACTGGCACAAACTCTGACCCAGTTAGCTTGGTGGGTTGGGTTAAAGCTTTTGTGGAATCTACGCCTTACCTGGAAAAGGTTAAGAACACTCAGCTAGTAAATTCCAGCATTCCAGCGATTAACTCGTCTGGTGACGCATCTTACGCACTGTATGGAGAAGTGGGCCTACAATCTCTGGTTGCAAGTACACAGCTTCAGGGTAGAAATGCAATTCAAGCACAACAAGCCAGCTCTAATTTATCCGCCTTGTCTGGTGTAACTGCCTCTACAAACGGTCTACCATACTTTACCAGCACTACTGCCATGGGGATTGCGACTCTTACATCGTTTGGTAGAAGTTTTATTTCTGCAAACGATAGTGCAAGTGCTAGGTCACTATTAGGTCTGGGCTCTTCTGCCACTTTGAATGTTGGGACTACAGCCAACACTGTTGTGGCGGGAGACGACCCTAGGATTACAGGTGCTATGCAGAGGGGCAACAACCTTGCAGATCTGCTCAACATAGGGTCAGCACGTGCTAATCTGGGCCTTGGTACTGCTGCAGTGCAGAATATAACAACAACGCCAACTGACACAACTGGCGGAAGACTACTAAAGGTTGGTGACTTTGGCATTGGTGCTATCTCTGGTATCAGTGTTCCTGATGCTAACGCTATTTCTGCCACTGGTGTCTATGCTATACAAAACAACACAACCAACTTACCTTCAGGTGTTGGCGCTGGTGGCACAATTTTCAATCAAATCTGGGACTCCAACTCTTCTCAACAAATACTGATGTTCGGTAGCAAGCTTTGGATTAGAACTAAAGCAACCTCTTGGGGGAATTGGCAAGAAGTTTATACAACTAGCAACAGCAACGCCCTAGCAAGTCAGGTTCAAGCTAGCCTGCAGCCAGCACTAGATCTAAAGGTTAACAGATCTGGAGATGCAATGACTGGATCTTTGACATTGCCTAGCATGGAAATTGGTTCTGGCAGCCAACAAGGCTATATAGACTTCCACTCTTCCAACACCAATAATGATTACGATTCTAGAATTGTCTCTAGTCTTGGTAACTCTACCACTGGTCAGGGTGCCCTTAACTACATTGCAGCCGGGGGTCACTATTTTACGGGCTTGATTAACGGGACAGCAACTGTTGCACAAAGCCTGACAGGTAATATTGGTATAGGTCAGGTCAACTCACTGCAGGCTCAGCTGGACGGTAAGATGTCTGTCTCTGGTGGTGGGAACCCAGCGTTTAGTTCTAGCAGATTTTCTGGTCCATGGTCTGGTACGGGCGGTGCTGCGGGAATACAAGGTCTTAACGTTGGTTGGAACTCAGGCGAAGCTAGTGGTTTCTCTGGAGAAGCTAACTTCGTGTGTAACCGTGGTAGCGGTACTGGTGGCTTTACTTTTAGATGTATTAATGCTAATAACACCTCCGGCGGCCCAGTAACAACCATTAGCTACGATGGCTCCATGTACGTACCGGGTAGGCTCACATCGGCAGGTGATGTTCACGTGGGCGGGAGTTTTATAGACACCAGTGGTAATATCAATGGATCAATGTGGGGAGGTTATCTAAGTAACTACCTGTCCTCATTTTACTTGACCATTGGAAACTTAGCAAACAATATAGCTCAAATGGGCACTGGTGGTATAGGAACTTACGCATTTTTGGTTAACACGTCAGGCTCCACTGTTGCAGCAGGTCAAAATCTATCCTCAGGCTTAAGCTATGCCTCTACCACTAGTAATGGTGGCGCGTCTACCGATGGTGGTACTTGGAGAGCCATGGGCTTTGGTGTAAATAATGGTGCAACCCTCTGGCTTCGTGTAGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
324c7bac6fa116adbcb4bf8ebc4607158d13a5957d70b241371555f3760b7890
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6806
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50