Protein

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Genbank accession
YP_010657847.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSATITSANTVLTTLTVQGTGGTPGGQVGIYIDNVLRPERDTPDGSGNWEIVVTDLTGGAHTVRATDVMIGGTSVITQFVPASVTVESAVGDTTEDVTPVVQGTLLNEDDSPIVGATISIYMKAHADSTYTLKGTTTTNSSGVYTFEIPTALADGEYDFYAVASAVTMTSLVDSVTVSKPLEAPVMEPVTDRLFAIAADSIFIGINPPVGYEILSAKTMNIAKPLGEWSLGGSSLGLAINSTTGAVTIETSAQFAAAGSRQISVTCTNSQGSSSTLLNLVVVAENSGIKYIDSVAGSDVNTGLNPNVPRANNDSSSGRRRFKRGGVWNIQLGSADSHTREDYGDPWKPRPKFGSGTTYGYDGSNLDNATIRSLWFSDWVSRGINVQVVTNILIEDCLFTDSRSSSVQGIKLHNSDKAAALTVPDLPGKTFNLIYKDNELRNVKGDGLYITKITGILIQNNKHDAAYGGGADCIQIAYENNDTNISKNVVIRGNLLLQSPQSQSDKGGLVCEQTKVYLAEYNDIGGKNFSFSSIGFDATCRSNNMRDGKLNTYSFGYGTGEQSHFGRHHVYDNNISNCIRGIGLSSFGDSTILNNGVYGYQRYDFECHDNVISKCTYGFFADRPWSGYVKRNIFMQCTNAITRQGGQVSGNTVANLGVYTTQDVTGNYTNDGTWLNSVPPKLSGTIAAGATVSVANAEWKLNGVVTAPDEVLYFWRNKGYDIAGETGSSYTIPVDVASDLDLSCVMFARKGTNWMLAVAENDWPTDAYFIPRAYTEGNLKFKKRYFKLGDVAA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 84881,45460 Da
isoelectric point:5,05085
aromaticity:0,08965
hydropathy:-0,20316

Domains

Domains [InterPro]
DC_2112
ATT
1–100
DC_2112 IPR012334 IPR006626 IPR006626 DC_1753
IPR006626
Unmapped
7–34
IPR006626 IPR013783 IPR011050
DC_0928
ATT
73–225
DC_0928 IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
STR
365–698
IPR011050
YP_010657847.1
1 792
Architecture
ATT
STR
RBD
ATT 1-225 | STR 278-698 | RBD 699-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010657847.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,8682
Central domain 190 683 495 0,8934
C-terminal 684 792 108 0,5291
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-683
C-terminal
684-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N38
[NCBI] 		2509750 Uroviricota > Caudoviricetes > Schitoviridae > Cyamitesvirus > Cyamitesvirus N38
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010657847.1 [NCBI]
Genbank nucleotide accession
NC_070851.1 [NCBI]
CDS location
range 15026 -> 17404
strand +
CDS
ATGTCTGCTACAATCACAAGCGCTAACACGGTACTTACTACCCTTACCGTTCAAGGTACTGGAGGTACTCCAGGAGGTCAGGTAGGTATCTACATTGACAACGTTCTTCGTCCTGAGAGAGACACACCAGATGGTAGCGGCAATTGGGAAATTGTTGTCACTGATCTAACTGGTGGTGCTCACACTGTTCGTGCCACTGATGTTATGATCGGTGGAACCAGTGTGATTACACAGTTCGTTCCTGCATCTGTTACAGTTGAATCTGCTGTAGGCGATACCACTGAAGATGTAACTCCAGTGGTTCAGGGAACTCTTTTGAATGAGGATGATTCTCCTATCGTTGGAGCTACCATCTCCATTTATATGAAGGCACATGCTGACTCTACATACACCCTCAAGGGTACGACCACGACTAACAGTTCTGGCGTCTATACCTTTGAGATCCCAACTGCTCTTGCAGATGGTGAGTATGATTTTTATGCTGTAGCATCTGCTGTAACCATGACCTCTCTTGTGGATTCGGTAACGGTCAGCAAGCCTCTGGAAGCTCCTGTCATGGAACCAGTGACGGACAGACTCTTTGCCATTGCAGCAGACAGTATCTTTATTGGTATCAATCCTCCGGTAGGTTATGAAATCCTGTCTGCCAAGACTATGAACATTGCCAAGCCTCTTGGTGAGTGGTCTCTTGGTGGATCTTCCCTGGGTCTTGCTATCAACAGCACAACTGGTGCTGTGACGATTGAAACATCTGCTCAGTTTGCTGCTGCCGGATCTCGTCAGATCTCTGTTACCTGCACCAATTCCCAAGGTAGCAGCAGCACACTCCTCAATCTTGTGGTAGTGGCAGAGAACTCCGGTATCAAATACATCGACTCTGTTGCAGGTTCTGATGTTAATACCGGTCTGAATCCTAATGTTCCTCGTGCTAACAACGATAGCTCCTCAGGTCGTCGTCGTTTCAAGCGCGGAGGTGTTTGGAATATTCAGCTTGGTTCTGCTGACAGTCACACCCGTGAAGATTACGGTGATCCATGGAAGCCTCGCCCCAAGTTTGGCAGCGGTACTACCTATGGATACGATGGATCCAACCTGGATAATGCCACCATTCGTTCCCTTTGGTTCAGCGATTGGGTCTCTCGTGGTATCAACGTCCAAGTTGTGACCAATATTCTCATTGAGGATTGCCTGTTTACAGACAGCAGATCCTCCAGTGTTCAGGGTATTAAGCTACACAATTCGGATAAGGCTGCTGCACTGACGGTACCTGATCTTCCTGGTAAGACGTTTAACCTTATTTATAAGGATAATGAACTTCGTAACGTTAAGGGTGATGGTCTCTATATCACCAAGATCACTGGTATTCTGATCCAGAACAACAAGCATGACGCTGCATACGGTGGTGGTGCTGACTGTATCCAGATCGCCTACGAGAATAACGATACCAACATCAGCAAGAACGTTGTGATTCGTGGTAACTTGCTTCTGCAATCTCCACAGTCTCAATCGGATAAAGGTGGTCTTGTCTGCGAACAGACCAAGGTCTATCTGGCAGAATACAATGACATTGGTGGTAAGAACTTCTCGTTCTCCTCCATTGGTTTCGATGCTACCTGCCGATCCAACAACATGAGGGATGGTAAGCTCAATACCTACTCCTTTGGATATGGTACTGGTGAGCAATCTCACTTTGGTCGTCATCATGTCTATGACAACAACATCAGCAACTGTATCCGTGGTATTGGTCTATCCAGCTTTGGTGATAGCACCATTCTAAATAATGGTGTCTACGGTTACCAACGTTACGACTTTGAGTGCCATGACAATGTGATCAGCAAATGTACCTATGGATTCTTTGCTGACCGTCCTTGGTCTGGTTACGTAAAGCGTAACATCTTCATGCAATGCACCAACGCTATCACCCGTCAGGGTGGACAGGTCAGTGGTAACACTGTTGCCAATCTTGGTGTCTACACGACCCAGGATGTCACAGGAAACTACACCAACGATGGTACTTGGTTGAACTCTGTTCCTCCAAAGCTCTCGGGAACCATTGCTGCTGGTGCTACTGTCTCTGTAGCGAATGCTGAGTGGAAGCTTAACGGTGTCGTAACTGCTCCAGATGAGGTTCTCTACTTCTGGAGAAACAAGGGTTATGATATTGCAGGTGAAACTGGTAGCTCTTACACCATCCCTGTTGATGTTGCTTCTGACCTGGATCTCTCTTGTGTCATGTTTGCTCGTAAGGGAACCAATTGGATGCTCGCTGTAGCAGAGAACGATTGGCCTACAGATGCATACTTCATCCCAAGAGCCTACACAGAAGGTAACCTCAAGTTCAAGAAGCGTTACTTCAAGCTGGGTGATGTAGCAGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
36c5ed5be895ec35ebedeffdb98527576c6052785ad207d5eb8bab59d270eec2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7148
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank