Protein

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Genbank accession
QZI86540.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSLYIGRDNSGNGIFHATKDEQSETSLKAGVNEKTLFHSDIPFIRVSKTYNLGLTYRESRPPNYSDNFSTTSEYWAFPSAMKTDLRNGYVFLGFATMSDGSKIQIQSDKFCAHVDGSRVTASQGGGNWFFHQYGHSQEWGGSTASGLRFGFPISNSIKYFWSQNGSIDAWFSQNSSANWYSPGAGGWFSRQTSSTVNSSTNHPPYLHRDSAGVLLLRCGRGLNGPNVKLNDVVSGTTANANVTPFATSIVYYRLDVKANSSGYYPVTLSATLPGELYIDNSKLLTNGVDHLSNLKYIKFRGFYGNNTTVGATTSGGTLLPGNTYNYSQSVGGWPHGMLPTYTEVLYTGSADVPGHRKPYAVYVGGKYKTHTYGNFTGIVLTATTRTITPTSTMNNAVSLLPSYNGTLFELVSIPSVNEIEFTNTSFRINNSIDLYTSSNQPIACIGEQRKLQLDTTNRNIYPGGVVSTLEDSINLGSGLGSHLHLLFGMDGINTTDNYVRAYWDRTGGTLNMYPPTDARTTDPDLGPQLAAIPQNGYVHIGSMRFIGRDFYTTPNQQAAVGVSLTLRYTGTTLQLWSHARNVSTVGNYMQYRMPRASINIMRLTSG
Physico‐chemical
properties
protein length:606 AA
molecular weight: 66388,04130 Da
isoelectric point:8,97247
aromaticity:0,11716
hydropathy:-0,37013

Domains

Domains [InterPro]
IPR059609
RBD
1–604
IPR059609
QZI86540.1
1 606
Architecture
RBD
RBD 1-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QZI86540.1
1 606
Domain Start End Length (AA) Confidence
N-terminal 1 37 37 0,1260
Central domain 38 236 200 0,1980
C-terminal 237 606 369 0,8561
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-37
Central
38-236
C-terminal
237-606

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 70E38.1
[NCBI] 		2859293 No lineage information
Host Vibrio crassostreae
[NCBI] 		246167 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QZI86540.1 [NCBI]
Genbank nucleotide accession
MW865327 [NCBI]
CDS location
range 119 -> 1939
strand -
CDS
ATGAGTTTATACATAGGAAGAGATAATAGTGGGAATGGTATTTTCCACGCAACAAAAGATGAGCAGTCAGAGACCTCATTAAAAGCGGGGGTGAATGAGAAGACCTTATTCCATTCCGATATACCGTTTATTAGAGTAAGTAAGACCTATAATTTGGGTCTTACCTATCGGGAATCACGCCCACCAAACTACTCTGACAACTTCAGTACCACTAGTGAGTACTGGGCTTTCCCGTCAGCCATGAAAACCGACCTTAGGAATGGGTATGTGTTCCTAGGGTTCGCTACGATGTCCGATGGTTCTAAAATACAGATACAGTCTGATAAGTTCTGCGCGCACGTAGATGGTAGTAGAGTTACCGCATCTCAGGGTGGTGGTAACTGGTTCTTCCATCAGTACGGGCATAGCCAAGAGTGGGGCGGATCTACAGCTAGTGGACTACGCTTCGGATTTCCAATTTCTAACTCTATTAAATACTTCTGGTCACAGAATGGTTCAATAGATGCGTGGTTCTCTCAGAACTCCTCGGCAAACTGGTACAGTCCAGGCGCAGGCGGGTGGTTCTCTAGACAAACCTCTAGTACTGTTAACTCTAGTACCAATCATCCACCATACCTACATAGAGACTCCGCAGGTGTTTTACTATTACGTTGTGGTAGAGGACTCAATGGGCCTAACGTTAAACTTAATGACGTGGTATCTGGTACTACTGCCAACGCTAATGTAACCCCATTCGCTACGTCTATTGTGTACTACCGACTAGATGTTAAGGCTAATAGTTCAGGATACTACCCTGTAACATTAAGTGCAACACTCCCCGGCGAACTCTACATTGATAATTCTAAGTTACTTACCAATGGAGTAGATCATCTCTCTAATCTTAAGTACATTAAGTTCAGAGGCTTTTACGGGAATAATACTACTGTAGGTGCAACTACTTCAGGAGGTACGCTACTACCAGGTAATACTTACAACTACTCCCAATCCGTCGGGGGATGGCCTCACGGTATGTTACCTACGTACACGGAGGTTCTATATACTGGATCAGCTGATGTTCCTGGACATAGAAAGCCTTATGCGGTATACGTAGGTGGTAAATATAAAACCCATACTTATGGTAACTTCACTGGAATAGTACTTACTGCTACCACTAGAACCATAACCCCTACATCCACCATGAACAATGCGGTATCCTTACTACCTAGTTACAATGGTACGTTGTTTGAGCTAGTATCTATTCCGTCTGTTAATGAAATAGAATTTACTAATACATCTTTTCGTATTAACAATTCTATCGATCTATATACGTCATCAAACCAACCTATCGCATGCATCGGCGAACAGCGTAAGTTGCAGCTAGATACTACTAACCGTAATATCTACCCAGGTGGTGTGGTATCTACACTAGAGGATTCTATTAATCTAGGAAGTGGCTTGGGTTCGCATCTTCATTTACTATTTGGTATGGATGGTATTAATACGACCGATAATTATGTTAGGGCTTACTGGGATAGGACAGGTGGTACTTTGAATATGTACCCACCAACTGACGCTAGGACTACTGATCCCGACTTAGGGCCTCAACTAGCAGCTATTCCACAGAATGGTTACGTACATATTGGTTCTATGCGCTTTATTGGAAGGGACTTCTACACTACGCCTAACCAGCAAGCAGCCGTCGGAGTATCATTAACCCTTCGATACACTGGAACCACTCTCCAACTCTGGTCACATGCTAGAAACGTGTCGACTGTTGGGAACTACATGCAATATCGTATGCCTCGTGCATCCATTAATATAATGCGGTTGACGTCCGGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8cc29711115e70aac84cd40e4cfc0a3d4cb1006bc1ad0e26ee420c440a139461
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Rapid evolution of virus immunity in the wild Piel,D., Bruto,M., Labreuche,Y., Blanquart,F., Chenivesse,S., Lepanse,S., James,A., Garcia Cruz,R., Dubert,J., Petton,B., Lieberman,E., Wegner,M.K., Hussain,F.A., Kauffman,K.K., Polz,M.F., Gandon,S., Bikard,D. and Le Roux,F. 2024-02-09 — GenBank