Protein

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Genbank accession
ANY28867.1 [GenBank]
Protein name
receptor-binding protein 1
RBP type
TSP
Evidence RBPdetect
Probability 0,56
Protein sequence
MTIKKYTFFSPNGNDFPVTADADAKLYMALGSLDYTTFSRVDWSNTTQAGLTKTFVKTSFVVAGRFFQAENELVQLLPAATNFIHVVIDLSTPLNPVKFTSETTDNSNTIDINNSSGIYKRCIEKVTTNSGSIISTEKIAQNRIFDIATIKKAVINTANVVNSSVSGATNLNTLNTSGKAVLSILEVQNSTLLKNTTISGNLTVSGVTTSKYFTATESVTSKNVTSNNVTSNNVIAENAITSKNVIAENTLIVKAVKGKRSEQFQTPTTYATITGTALKFFTLYKSANVVTCNFGGTPTSGSIPGGGAIVGWITDNAFKPEHTQNFTVFAANGQRCRFTVDPGGAVRSHEPVGENVEIWDSMQWIVAGTEGGAASK
Physico‐chemical
properties
protein length:376 AA
molecular weight: 40188,66110 Da
isoelectric point:8,81336
aromaticity:0,08245
hydropathy:-0,09202

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–140
G3DSA:2.60.520.10 DC_2271
IPR048780
RBD
2–138
IPR048780
SSF141658
STR
2–138
SSF141658
ANY28867.1
1 376
Architecture
STR
STR 1-376
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANY28867.1
1 376
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,8289
Central domain 206 365 161 0,1955
C-terminal 366 376 10 0,9965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-365
C-terminal
366-376

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 4R15L
[NCBI] 		1874590 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANY28867.1 [NCBI]
Genbank nucleotide accession
KX379667 [NCBI]
CDS location
range 14768 -> 15898
strand +
CDS
ATGACGATAAAAAAATATACGTTTTTTAGTCCAAATGGTAACGATTTTCCAGTAACTGCTGACGCTGACGCAAAACTTTACATGGCTCTTGGTAGTTTAGATTATACAACTTTTAGCCGTGTTGATTGGTCAAATACTACACAAGCTGGGCTAACTAAAACATTTGTCAAAACGAGTTTTGTGGTCGCTGGTAGGTTCTTCCAAGCCGAAAATGAACTTGTACAACTATTGCCGGCAGCAACTAATTTTATTCATGTTGTAATTGATTTAAGTACGCCTTTAAATCCTGTTAAATTCACATCAGAAACAACGGATAACTCCAATACGATTGATATTAACAATTCATCAGGTATTTATAAGAGATGTATCGAAAAAGTAACAACAAATAGCGGTTCTATTATTAGTACGGAAAAAATAGCTCAAAACAGAATATTTGATATAGCTACAATTAAAAAAGCAGTCATAAATACCGCTAACGTTGTGAATTCAAGTGTTTCTGGGGCAACTAACTTAAATACTTTAAATACTTCTGGAAAAGCTGTTTTAAGTATCTTAGAGGTACAGAACTCTACGTTATTAAAAAATACTACAATTAGTGGTAATTTAACCGTTAGTGGTGTGACAACATCAAAATATTTCACAGCTACGGAATCAGTAACATCAAAAAACGTAACATCAAATAACGTAACATCAAATAACGTAATAGCTGAAAACGCAATAACATCAAAAAACGTAATAGCTGAAAATACATTGATAGTAAAAGCTGTGAAAGGGAAACGTTCAGAACAATTTCAAACACCGACTACTTACGCTACAATCACAGGCACAGCTTTAAAGTTTTTCACTTTATACAAGTCCGCTAACGTGGTAACTTGTAACTTTGGGGGTACCCCTACAAGTGGTTCGATTCCAGGAGGTGGTGCTATTGTTGGTTGGATTACAGACAATGCGTTTAAACCAGAACACACTCAAAACTTTACCGTATTTGCAGCAAACGGTCAACGCTGTCGTTTTACAGTAGACCCAGGGGGGGCTGTTCGTTCACATGAACCAGTTGGAGAGAATGTTGAAATTTGGGATAGCATGCAATGGATTGTTGCGGGAACAGAGGGAGGAGCTGCTAGCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8dd5bce83e49332b32c838d993866e2ec08ffd4db2640f2228ed5682196cf68a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6975
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages play LEGO with their Carbohydrate Binding Modules Hayes,S. 2019-07-02 — GenBank