Protein

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Genbank accession
YAS76317.1 [GenBank]
Protein name
putative amidase
RBP type
TSP
Evidence DepoScope
Probability 0,97
Protein sequence
MQAGGSLPAGFSWSTESGDGLSTLCVFLSTLGEVAVYGGDNPDDSSSFSLKAIYHIGRPLGKRAIVFVKNDVWIATNNGLISMKNILLQEEKTNLPLSWPIQEQWEQAIMVAPTGWSMILWEKRNMLLISCPKNSLLSDKTFVMNVAHNNRWSSFHNWFTQSYVVANENLFFGDYEGTFWQGDISGSDNARPFIGIYLSPFHAIDPRLGFQRRACVAHLSLQAYQRPYLKLFARANYDHSYPEFSKETISNNPMDNGIWDNSLWDEVKWTDNLFVTKKKLFQFCQNVVAYGNCLAVGCVIVSSGKSINDIQINNAKLLVE
Physico‐chemical
properties
protein length:320 AA
molecular weight: 36063,55110 Da
isoelectric point:6,08606
aromaticity:0,12500
hydropathy:-0,14906

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAS76317.1
1 320
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,7542
Central domain 188 309 123 0,0756
C-terminal 310 320 10 0,9940
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-309
C-terminal
310-320

Taxonomy

  Name Taxonomy ID Lineage
Phage Liberibacter phage P-V1R1-4
[NCBI] 		3464942 Viruses >
Host Candidatus Liberibacter asiaticus
[NCBI] 		34021 Bacteria > Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Candidatus Liberibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAS76317.1 [NCBI]
Genbank nucleotide accession
PX222958 [NCBI]
CDS location
range 3785 -> 4747
strand -
CDS
ATGCAAGCAGGAGGATCGTTGCCTGCAGGATTCTCATGGTCAACTGAAAGTGGTGATGGTTTGTCTACTTTATGCGTTTTCTTATCCACTCTTGGTGAAGTCGCTGTTTATGGTGGAGATAATCCTGATGACTCCTCTTCTTTTTCTCTCAAAGCAATTTATCATATTGGACGTCCTTTGGGGAAAAGAGCTATCGTTTTTGTCAAAAACGACGTATGGATTGCAACGAATAACGGTTTGATTTCTATGAAAAATATTCTCTTACAGGAAGAGAAAACAAATCTTCCTTTATCTTGGCCTATTCAAGAACAATGGGAACAAGCAATTATGGTAGCTCCAACAGGGTGGTCGATGATTCTTTGGGAAAAACGCAATATGTTATTGATTAGTTGTCCTAAAAATTCTCTTCTATCTGATAAAACGTTTGTGATGAATGTGGCTCATAATAATCGTTGGTCTAGTTTCCATAATTGGTTTACTCAATCTTATGTTGTTGCAAATGAAAATCTTTTTTTTGGAGATTATGAAGGTACTTTTTGGCAAGGAGATATTTCGGGATCAGATAATGCACGGCCTTTTATCGGGATATACCTTTCTCCTTTTCATGCAATTGATCCTCGTTTAGGATTTCAAAGGAGAGCTTGTGTCGCTCATCTTTCTCTTCAAGCATATCAACGTCCCTATCTCAAATTATTTGCTCGTGCTAATTATGATCATAGTTATCCGGAGTTCTCAAAAGAAACGATCAGTAATAATCCAATGGATAATGGTATATGGGATAATTCTTTATGGGATGAGGTTAAATGGACAGATAACTTGTTTGTCACAAAAAAGAAACTATTCCAGTTTTGTCAAAATGTAGTCGCTTATGGCAATTGTTTGGCAGTTGGTTGTGTCATCGTTTCTTCTGGAAAATCTATCAATGATATTCAAATTAATAATGCAAAGCTCTTAGTTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6cf948de1328bf5062fc7eaaf834c9cb4af23951412ac87181832435f7ad5749
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8235
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50