Protein

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Genbank accession
WBY53280.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESRYVKFDPTGTNFPAEITDVQAAIAAISPAGVNGVPDASSTTKGILFLATEQEVIDGTDNTKAVTPATLATRLSYPNATETVYGLTRYSTNDEAIAGVNNESSITPAKFTVALNNAFETRVSTESKNGVIKISSLPQALAGADDTTAMTPLKTQQLAIKLIAQIAPSETTATESDQGVVQLATVAQVRQGTLREGYAISPYTLMNSTATEEYKGVIKLGTQSEVNSNNASVAVTGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSKYTLNRPELIGNETRPWNISLNYIIKVKE
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55823,19710 Da
isoelectric point:7,06414
aromaticity:0,06452
hydropathy:-0,39469

Domains

Domains [InterPro]
DC_0176
STR
1–447
DC_0176
IPR015173
STR
246–326
IPR015173 IPR037053 IPR044916
SSF69349
STR
246–326
SSF69349 SSF88874
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR011083 IPR027448
WBY53280.1
1 527
Architecture
STR
ATT
STR
STR 1-329 | ATT 330-400 | STR 401-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage REP4
[NCBI] 		3022457 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBY53280.1 [NCBI]
Genbank nucleotide accession
OQ174503 [NCBI]
CDS location
range 146991 -> 148574
strand +
CDS
ATGAGTAATAATACATACCAACACGTTTCTAATGAATCTCGCTATGTAAAATTTGATCCAACTGGTACAAATTTTCCAGCAGAGATTACTGATGTTCAGGCTGCTATAGCAGCCATTTCTCCTGCTGGTGTAAATGGAGTTCCTGATGCATCATCAACAACAAAGGGAATTTTATTTCTTGCCACTGAACAGGAAGTTATCGACGGAACTGATAATACCAAAGCAGTTACACCAGCAACGTTGGCAACAAGATTATCTTATCCAAACGCAACTGAAACTGTTTATGGATTAACAAGATATTCAACCAATGATGAAGCAATTGCCGGAGTTAATAATGAATCTTCTATAACTCCTGCTAAATTTACTGTTGCCCTTAATAATGCCTTTGAAACTCGTGTTTCAACTGAATCAAAGAATGGAGTTATTAAAATTTCATCTCTACCGCAAGCATTAGCTGGCGCAGATGATACTACTGCGATGACTCCGTTAAAAACGCAGCAGTTAGCTATTAAACTAATTGCGCAAATCGCTCCTTCTGAAACCACAGCTACCGAATCGGACCAAGGTGTTGTTCAATTAGCGACAGTAGCTCAAGTTCGTCAAGGAACCTTAAGAGAAGGCTATGCAATTTCTCCTTATACGCTAATGAATTCTACTGCTACTGAAGAATATAAAGGCGTAATTAAATTAGGAACACAATCAGAAGTTAACTCGAATAATGCTTCTGTTGCGGTTACTGGCGCAACTCTTAATGGTCGTGGTTCTACAACGTCAATGAGAGGCGTAGTTAAATTAACTACAACCGCCGGCTCACAGAGTGGAGGTGATGCTTCATCAGCATTAGCTTGGAATGCTGATGTTATCCACCAAAGAGGTGGTCAAACGATTAATGGAACACTTCGCATTAATAATACGCTCACAATAGCTTCAGGCGGAGCAAATATTACCGGAACAGTTAACATGACCGGTGGTTATATTCAGGGTAAGCGTGTTGTAACACAGAATGAAATAGATAGAACTATTCCTGTCGGAGCTATTATGATGTGGGCGGCAGATAGTCTTCCTAGTGATGCTTGGCGCTTCTGTCATGGCGGAACTGTTTCAGCATCAGATTGTCCGTTATATGCTTCTAGAATTGGAACAAGATACGGCGGAAGCTCATCAAATCCTGGATTACCTGATATGCGCGGTCTTTTTGTTCGTGGCTCTGGTCGTGGCTCTCACTTAACAAATCCAAATGTTAACGGTAATGACCAATTTGGCAAGCCTAGATTAGGCGTAGGTTGTACTGGTGGGTATGTTGGTGAAGTACAGAAACAACAGATGTCTTATCATAAACACGCTGGCGGATTTGGTGAGCATGATGATTCTGGAGCATTCGGTAATACCCGTAGATCAAATTTTGTTGGTACACGTAAAGGACTTGACTGGGATAACCGTTCATATTTCACCAATGACGGATATGAAATTGACCCAGCATCACAACGAAATTCCAAATATACACTAAACCGTCCTGAATTAATTGGAAATGAAACACGTCCATGGAACATTTCTTTAAACTACATAATTAAGGTAAAAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7085eb3d2ea674eb3a4f87594bb7212e7065734a34d37d63bfb7a4a350c9e26f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6841
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Swapped genetic code blocks viral infections and gene transfer Nyerges,A., Vinke,S., Flynn,R., Owen,S.V., Rand,E.A., Budnik,B., Keen,E., Narasimhan,K., Marchand,J.A., Baas-Thomas,M., Liu,M., Chen,K., Chiappino-Pepe,A., Hu,F., Baym,M. and Church,G.M. 2022 — GenBank