Protein

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Genbank accession
YP_009819672.1 [GenBank]
Protein name
straight fibre tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MDKNMIENTQPLKMGITDVYPGYTAIYMQHTAYTDVDVQGKMVWVNGTAQTPDVNIDRYYVFAVGLNPGSPYNLEAAYFDAMVDAELRAERFGMAISDPVATATRAEPTINSYTITAEEVDVGVAPPVLTLDLDGDADLIEAQWAPTGTSDWTGFFYGGFLQTLGVAGLPIGVAIDVRIRGVVNFPDGSTRDVSSWDTLENITLNWGFTPPEKVSNITFQVAKLKEPAERYDVKISWDWEKLEGANAREFVVWRLDKAKYDSNSASDKWAGAEVINAGTAKSVVVTNHPFDREQVYRVATTAWGPESDDVVYADNIIFKIDDTTTIDNSFTNETGIDLTYSHIRGRVWDDTNSVWKQSFNVDAATGNVTIGILDEEGEAPISFTSDGNGNGTVNVKGSVISETINAANFVLTNLNGTQSPQLRSAGKTEYGDSTEGIWMGHEMSGGYRFKFDLGNSAQYIRWDGDTLRISGDVAIGTPQGDRPLYSQVRTIYKAASSTPATPSQTTYPPSGWNVAPPTVPSGQYLYISVGLVDLTTSFLVDGESWSAPALTGGTGAPGQDGADGTDGADGPGFYSQAISGFNGTFQSSTATSFFQSQFGRPPAKYDVLTQYNPSNPSIATTRQWDTASSGAWGTVALAVHGNMVVDGSVTADAFIANTILGTNLHIGNTGGDGVYAGIRGSHTFGSSLAFAAGYTSTTDNTLPNWKWGVTSNGIMYARNSAGSTRVELNPVTDKFSFRGDITAETLTLTGDIPDSIDNSNVTTSSIGAETPSGAQAKANAAKNAAISTAASDATSKANAAEAAANGYTENRIYPNQSSTVIKSANYSQGNAGFSMDINGNAEFNNVVVRGTGYFTDGVFDGTVYAEKIVGDIVSGLVKSNPPSSQNRPGGTTGWIDLSTVVTISHARPYPRRIQLASAEGYDAIQFMAEVERNVGFILTFQLISSNGTVVWDSSQSFSSIGSSEDNLVTVSFPSVNGYIPANTPAGSYKFRITSNHDIYHAWYMYRSLGTARYPITSQLVAYLFKDSGELS
Physico‐chemical
properties
protein length:1031 AA
molecular weight: 110315,02070 Da
isoelectric point:4,53225
aromaticity:0,10378
hydropathy:-0,26101

Domains

Domains [InterPro]
IPR057550
STR
14–98
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
104–195
IPR057551 DC_1191
YP_009819672.1
1 1031
Architecture
STR
STR
STR
STR 14-98 | STR 104-196 | STR 210-1020 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VspSw_1
[NCBI] 		2484249 Uroviricota > Caudoviricetes > Demerecviridae > Pogseptimavirus VspSw1 >
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009819672.1 [NCBI]
Genbank nucleotide accession
NC_048151 [NCBI]
CDS location
range 109712 -> 112807
strand +
CDS
ATGGACAAAAATATGATTGAAAACACTCAGCCGCTAAAAATGGGTATCACTGACGTCTACCCAGGGTATACGGCTATTTACATGCAACACACAGCCTACACGGACGTAGACGTACAGGGAAAAATGGTTTGGGTCAACGGTACGGCCCAAACTCCTGACGTAAACATTGACAGGTACTATGTATTTGCTGTTGGACTAAATCCAGGCTCTCCGTACAACCTAGAAGCTGCGTACTTTGATGCCATGGTAGACGCGGAGCTTAGGGCTGAACGTTTTGGTATGGCAATCTCAGACCCCGTGGCTACCGCCACGAGAGCTGAGCCAACTATCAACTCTTATACAATTACAGCAGAAGAAGTGGATGTAGGTGTCGCCCCTCCCGTTCTTACCTTAGACTTAGATGGAGATGCTGACCTTATAGAAGCCCAGTGGGCTCCTACAGGTACCTCAGACTGGACTGGGTTCTTCTACGGAGGTTTCCTACAGACTTTAGGAGTGGCCGGCCTACCTATCGGAGTCGCTATAGATGTTCGAATCCGTGGCGTCGTTAACTTCCCGGATGGTAGCACTAGAGATGTGAGCTCTTGGGATACCTTAGAGAACATAACCCTTAATTGGGGGTTTACTCCACCAGAAAAGGTTAGTAATATCACCTTCCAAGTAGCTAAGCTAAAGGAACCAGCAGAAAGATATGATGTAAAAATATCTTGGGACTGGGAGAAGCTAGAAGGAGCTAACGCTAGAGAATTCGTAGTCTGGAGACTAGACAAAGCCAAATACGACTCTAACAGCGCGTCAGATAAGTGGGCAGGTGCTGAAGTAATTAACGCAGGTACAGCTAAGTCAGTAGTAGTTACTAACCACCCTTTCGACAGAGAGCAAGTGTACCGAGTAGCTACTACAGCTTGGGGACCGGAATCCGATGACGTCGTCTACGCAGATAATATTATATTTAAAATCGACGATACGACGACGATTGATAACTCGTTCACTAATGAGACAGGTATCGACCTAACATACTCCCACATTAGAGGTAGAGTATGGGACGACACTAACTCTGTGTGGAAACAGTCTTTTAACGTAGATGCTGCTACAGGTAACGTTACAATAGGTATACTAGACGAGGAAGGGGAAGCCCCGATAAGCTTCACATCCGATGGTAACGGTAACGGTACAGTAAACGTTAAGGGCTCAGTAATATCCGAGACTATAAACGCTGCTAACTTCGTGCTAACTAACTTAAACGGTACTCAGTCACCTCAGCTGCGTTCCGCTGGTAAGACTGAGTACGGAGACTCTACCGAAGGTATCTGGATGGGGCATGAGATGTCTGGAGGATACAGGTTCAAGTTTGACTTAGGTAACAGTGCTCAATACATACGTTGGGATGGTGATACTCTAAGGATTTCTGGAGATGTTGCTATAGGCACTCCTCAGGGGGATAGACCTCTGTACTCTCAAGTAAGGACTATCTATAAGGCCGCATCATCCACCCCAGCTACCCCTAGCCAAACTACTTATCCACCTTCCGGCTGGAATGTTGCACCACCTACAGTTCCTTCGGGTCAGTACCTATATATTTCAGTAGGTTTAGTAGATCTTACTACTTCCTTCCTAGTGGATGGGGAGTCCTGGTCAGCTCCTGCCCTTACTGGTGGTACTGGTGCTCCTGGACAAGATGGTGCTGATGGTACTGATGGGGCAGATGGGCCAGGGTTCTACTCTCAGGCCATATCTGGGTTTAACGGAACCTTCCAGTCTAGTACAGCTACTTCGTTCTTCCAGTCTCAATTTGGAAGGCCGCCAGCTAAGTACGATGTACTGACTCAGTACAACCCTAGTAACCCATCCATTGCTACAACTAGACAATGGGATACAGCCTCGTCTGGAGCGTGGGGAACAGTAGCCTTAGCAGTACATGGTAACATGGTAGTTGATGGGTCAGTAACAGCGGATGCGTTTATAGCAAACACTATCCTAGGTACTAACCTACATATCGGTAATACTGGAGGGGATGGGGTTTATGCTGGTATTCGTGGTAGCCATACATTTGGTAGTAGCCTAGCGTTTGCGGCAGGGTATACTTCCACAACAGACAACACACTACCTAACTGGAAGTGGGGAGTTACCTCTAATGGTATTATGTATGCCAGAAACTCAGCAGGTAGTACTAGAGTCGAGTTAAACCCTGTAACGGACAAGTTCTCTTTCCGTGGAGATATCACAGCTGAGACACTAACACTAACAGGAGACATACCAGACTCCATCGATAATAGTAACGTAACGACGTCTAGTATCGGAGCCGAAACCCCTTCTGGGGCGCAGGCTAAAGCAAATGCAGCCAAGAACGCGGCTATCAGTACCGCAGCATCAGACGCTACATCTAAAGCCAATGCAGCGGAAGCAGCAGCTAACGGATATACTGAGAATAGGATATACCCTAACCAAAGCTCTACAGTTATTAAATCCGCTAACTACTCCCAAGGTAATGCGGGGTTCTCAATGGACATTAATGGTAACGCAGAGTTTAACAACGTAGTTGTGCGAGGTACTGGTTACTTCACCGATGGTGTGTTTGATGGTACTGTATACGCAGAGAAGATTGTGGGTGACATAGTTTCCGGACTGGTCAAAAGCAACCCTCCATCATCACAGAATAGACCTGGGGGAACTACAGGCTGGATAGACTTATCTACCGTAGTGACAATATCTCATGCTAGACCTTACCCTAGACGCATCCAGTTAGCGTCCGCGGAAGGGTACGATGCAATACAGTTCATGGCAGAGGTAGAGAGAAACGTTGGGTTCATTCTAACGTTCCAGTTAATAAGCTCCAACGGTACTGTAGTTTGGGATTCTAGTCAGAGCTTCAGCTCAATAGGCTCCAGTGAGGACAACCTAGTGACTGTATCCTTCCCTAGCGTTAACGGGTATATTCCCGCAAACACGCCAGCGGGTAGCTACAAGTTTAGGATAACCTCTAACCACGACATATATCATGCATGGTATATGTACCGCTCACTAGGTACTGCCAGGTACCCTATTACCTCGCAGTTAGTGGCTTATCTATTCAAAGACTCAGGGGAGTTGTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
73abe07ac0806df99fd2ac2da7452e1af28e29622e3bfbd25c03134171955201
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2988
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genomic analysis of VspSw_1 Chen,L. 2024-12-16 — GenBank