Protein

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Genbank accession
AGH26465.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNKFLPLIMLVMAGSAAHAGGIVTKHQSSLQHSVEAGYNSYTRMGNSYSISGTNVTTSHTPAASGSSAVSNGIGVNTYDSSTGVGSIGSITGTQTGTGSFSFSQSFTQGDAAGSNADEALYGNQVHYSGGTAGTASVGTVTNAHAVTLTGGGLAGTTTTGQFVSEISVFD
Physico‐chemical
properties
protein length:170 AA
molecular weight: 16817,01550 Da
isoelectric point:5,75088
aromaticity:0,07059
hydropathy:-0,01765

Domains

Domains [InterPro]
IPR046285
STR
9–161
IPR046285
IPR046285
STR
20–161
IPR046285
AGH26465.1
1 170
Architecture
STR
STR 9-161 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH26465.1
1 170
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,0674
Central domain 68 159 93 0,1962
C-terminal 160 170 10 0,9750
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-159
C-terminal
160-170

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM1
[NCBI] 		536444 Uroviricota > Caudoviricetes > Pantevenvirales > Emcearvirus > Emcearvirus gerard
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26465.1 [NCBI]
Genbank nucleotide accession
HQ634175 [NCBI]
CDS location
range 97772 -> 98284
strand +
CDS
ATGAACAAGTTTTTACCTCTCATTATGTTGGTCATGGCAGGTAGTGCTGCACATGCAGGTGGAATCGTCACAAAACATCAGTCCAGTCTACAGCATTCTGTAGAGGCAGGATATAACTCTTATACTAGGATGGGTAACTCGTACTCTATCTCTGGTACGAACGTAACAACGTCACATACTCCTGCTGCCTCTGGTAGTTCAGCAGTATCGAACGGTATCGGTGTTAACACCTATGATTCAAGTACAGGTGTAGGAAGCATCGGATCAATTACAGGAACTCAGACAGGAACAGGATCCTTCTCATTTAGTCAGTCATTCACTCAAGGTGATGCTGCAGGATCTAATGCTGATGAAGCACTCTACGGTAACCAAGTCCACTACTCTGGTGGTACTGCAGGTACTGCTTCTGTTGGTACTGTTACTAACGCACACGCTGTTACTCTTACAGGTGGCGGTTTAGCAGGTACTACAACTACAGGTCAATTTGTTAGCGAGATCTCAGTCTTTGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e60407243f35b4430e00dd993439a200b4bbbc64595a5f60fa6084f493e076e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3527
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank