Protein

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UniProt accession
A0A8S5V9E6 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSYKTGKLLNIVRQFDKTNGKYEINGVDTGIAVFLYRKEREIFQPIPRGNYNISRENNNTFLNVDTTIDTQAIEYQIIYETDINSSEYKEAYPELKVLVQKYNEVAKDVSNINKYLKTTGVKTDADPLHQSQVLPQLERNTFWYLNENGIIGTFPIGKLNSKYEKMVVDLRKDVETLIQNKSDEKIRQIENTNTSAIETIIRNKNEYTDTVNRLSTNYNETVNRLSNEYKQIIENRKAENSRELESIKNNVVQETVAKLNEAKENIENKKNTAISEIANEKTRQINEIGLTVNNYIERNIELLKGDRGEQGIQGVQGIQGERGIQGEKGDRGARGDNQVIISETEPLETEANIWINPTGEIIELALSENARTSTNTMSSTELFGTGFPEGKINAPIGTTYIDRNVTSGALKWIKKVGDDSIGWKVLIGDTGNKEYTSSSLLGNSKIIFRRVNDIVTISFGGLQWDLFGLKNKADLGNNIINKTDNIKWVILKNMANKNFEIPIGYRSSKSLYTALYHDNGKILGSIYIGGVGDSNVIRIQPVGDYPNDGYPTLRAGVITYITSDSYPID
Physico‐chemical
properties
protein length:569 AA
molecular weight: 64154,13100 Da
isoelectric point:5,53688
aromaticity:0,07733
hydropathy:-0,60598

Domains

Domains [InterPro]
DC_0679
STR
1–385
DC_0679 DC_2009
Coil
Unmapped
160–180
Coil Coil G3DSA:1.20.5.320
A0A8S5V9E6
1 569
Architecture
STR
RBD
STR 1-385 | RBD 386-426 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ct6rT12
[NCBI] 		2825346 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAG03340.1 [NCBI]
Genbank nucleotide accession
BK016227 [NCBI]
CDS location
range 12255 -> 13964
strand -
CDS
ATGAGTTATAAAACAGGTAAACTCTTAAATATAGTCAGGCAATTCGATAAAACAAATGGGAAATACGAAATAAACGGTGTAGATACCGGTATTGCTGTTTTTTTATACAGAAAAGAAAGAGAAATATTTCAACCAATACCTAGAGGGAATTACAATATTTCAAGAGAGAATAACAATACATTTTTGAATGTAGATACAACAATAGATACACAAGCTATAGAATATCAAATAATTTATGAAACTGATATCAATTCAAGTGAGTACAAAGAGGCTTATCCAGAACTAAAGGTGTTAGTTCAAAAATATAATGAGGTGGCAAAAGATGTATCCAATATAAACAAATATCTAAAAACTACTGGAGTAAAAACAGACGCAGACCCTTTACATCAATCTCAAGTTTTACCCCAACTTGAAAGAAATACATTTTGGTATTTAAATGAAAATGGGATTATAGGAACATTTCCAATAGGGAAATTAAATTCTAAATATGAAAAAATGGTTGTAGATTTAAGAAAAGATGTAGAAACATTGATACAAAATAAGTCAGATGAAAAGATTAGACAGATAGAAAACACTAATACAAGTGCTATTGAAACAATTATCAGAAATAAAAATGAGTATACGGACACTGTAAACAGATTATCAACTAATTACAACGAAACAGTTAATAGATTATCTAATGAGTATAAACAGATTATAGAGAATAGAAAAGCAGAAAACTCAAGAGAGTTAGAGAGTATAAAAAATAATGTTGTTCAAGAAACTGTTGCAAAATTAAATGAAGCTAAAGAAAATATTGAAAATAAAAAAAATACAGCAATATCTGAGATAGCAAATGAAAAGACAAGACAAATAAATGAAATCGGATTGACTGTTAATAATTATATTGAAAGAAATATAGAACTTTTAAAAGGTGACCGTGGAGAGCAAGGAATACAAGGTGTCCAAGGTATACAAGGAGAAAGAGGCATACAGGGAGAAAAGGGAGACCGTGGAGCTAGAGGGGATAATCAAGTAATAATTTCAGAAACAGAGCCACTAGAAACAGAAGCTAATATTTGGATAAATCCTACTGGAGAAATCATAGAGTTAGCTTTATCAGAAAATGCAAGAACTAGTACAAATACAATGAGTTCAACCGAATTATTTGGAACAGGATTTCCCGAAGGAAAAATTAATGCTCCAATCGGAACAACTTATATTGATAGGAATGTGACAAGTGGAGCTTTAAAATGGATAAAAAAAGTTGGAGATGATAGCATAGGTTGGAAAGTACTTATTGGAGATACTGGGAATAAAGAATACACAAGTTCATCTTTATTAGGGAATTCCAAAATCATTTTTAGAAGAGTAAACGACATAGTTACAATTTCATTTGGTGGTTTGCAATGGGATTTATTCGGATTAAAAAATAAAGCTGATTTAGGAAACAATATTATTAATAAAACTGATAATATAAAATGGGTAATCTTAAAAAATATGGCTAATAAAAATTTTGAGATACCAATCGGATATAGAAGCTCAAAGAGTTTGTACACTGCTTTATATCATGATAACGGAAAAATATTAGGTTCAATTTATATCGGAGGAGTTGGAGACTCAAATGTAATTCGTATACAACCTGTAGGTGACTACCCAAATGATGGTTACCCAACATTAAGAGCTGGAGTAATTACATATATAACTTCAGACTCTTACCCAATAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e414defe28869bc1b4dcf485b9af96d22cbbb6a7cbfc8939f212b06df46903b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8254
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50