Protein

View in Explore
Genbank accession
QVJ12895.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEIGTATNFEDFFSKIVAFLTTNATLVTAGQAWQALRVRRDNIDTYATSLPDSFTGNGRKQIHTFRYDPRSLNTNNPASNGSESFWYTDSGFSAGSSYGQWKLRQAREVKTVRIKAPIGSRYASYAPKSFRLQYSDDGTAWTTALTVSNAPNWSAGERRDFAVPGTPGSHLYWKIIWDATQVVSYIGWQELLLLEADGTVANHFGSEVILKALGNSGLDEIYTGIRAEYDSAAGWYNLFMNGYTGYDANEPSWFNQPGALPGYGAQYTRATPMVPLWNTTMPYWMVASGRSFRFCVKVGTNYEGGYLGFILPYATPNQYPYPLAVGGSLCPINDSSRSAEWRYSYVSFAHGVYPGPGTQNYPESEANWATLYLRSPEGAWNYHGNRSAHGSNNSEGVGGPTVSSSPPYNIGINNAGLRNVWPHCMNGQGSSGLRPYRECLGGGYILQPCVLIQRSPAQVLGELEGTFAISGYQNSAENTTVFNGKTHVVFQNAYRNTIHEHWALSMD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56138,49220 Da
isoelectric point:6,56225
aromaticity:0,13752
hydropathy:-0,42181

Domains

Domains [InterPro]
DC_0072
STR
1–509
DC_0072
PF22633
RBD
84–163
PF22633
QVJ12895.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVJ12895.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 42 42 0,1564
Central domain 43 241 200 0,6237
C-terminal 242 509 267 0,9837
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-42
Central
43-241
C-terminal
242-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PSA20
[NCBI] 		2833438 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVJ12895.1 [NCBI]
Genbank nucleotide accession
MZ089734 [NCBI]
CDS location
range 2714 -> 4243
strand +
CDS
ATGGCAAACGAAATCGGAACCGCGACGAACTTTGAGGACTTCTTCAGCAAGATCGTCGCCTTTCTTACCACGAACGCGACCCTGGTGACGGCAGGTCAGGCTTGGCAGGCGCTGCGCGTCCGCCGGGACAACATCGACACGTACGCCACCAGCCTCCCGGACTCCTTCACGGGTAATGGTCGGAAACAAATCCACACGTTCCGCTATGATCCGCGGTCGCTGAACACGAACAATCCCGCCTCGAACGGTTCGGAGTCCTTCTGGTACACCGACTCAGGCTTCTCCGCCGGGAGCAGCTACGGTCAATGGAAACTGCGACAGGCGCGCGAAGTCAAGACCGTGCGCATCAAGGCCCCCATCGGGTCCAGATACGCAAGCTATGCCCCCAAGTCCTTCCGGCTCCAATACTCGGATGACGGAACCGCCTGGACTACGGCCCTGACCGTCTCGAACGCGCCGAACTGGTCCGCCGGGGAGCGGCGGGACTTCGCCGTGCCCGGCACTCCCGGTTCGCACCTGTATTGGAAGATCATCTGGGACGCGACCCAGGTGGTGAGCTACATCGGGTGGCAGGAACTCCTCCTGCTCGAAGCGGACGGGACGGTTGCCAACCACTTTGGGTCGGAGGTCATCCTAAAGGCCCTGGGCAACTCGGGCCTGGACGAAATCTACACCGGCATCCGGGCGGAGTACGACAGCGCAGCGGGTTGGTACAACCTGTTCATGAACGGATACACGGGCTATGACGCCAACGAGCCTTCCTGGTTCAATCAACCGGGAGCCCTCCCGGGCTACGGGGCGCAATACACTCGGGCAACCCCGATGGTCCCGCTGTGGAACACCACCATGCCGTACTGGATGGTTGCTTCGGGCCGCTCCTTCCGGTTCTGCGTCAAGGTCGGCACGAACTATGAGGGAGGCTATCTTGGTTTCATCCTCCCGTATGCTACGCCCAATCAATACCCGTACCCGCTCGCTGTCGGTGGTTCCCTCTGCCCCATCAACGACAGCTCCCGGTCCGCGGAGTGGCGTTATTCATACGTGAGCTTCGCCCACGGCGTGTATCCCGGGCCGGGCACTCAGAACTACCCGGAAAGCGAAGCGAACTGGGCGACCCTTTACCTGCGCAGCCCGGAAGGGGCGTGGAACTACCACGGCAACCGTTCTGCTCACGGTTCTAACAACAGCGAGGGCGTAGGGGGTCCGACCGTTAGCAGCTCGCCTCCCTACAATATCGGTATCAACAATGCCGGTTTGCGCAACGTCTGGCCTCACTGCATGAACGGCCAGGGGTCCTCGGGCCTGCGCCCCTACCGCGAGTGCTTGGGCGGCGGGTATATTCTCCAGCCTTGCGTGCTGATTCAGCGGTCGCCTGCCCAAGTCCTCGGGGAGCTGGAGGGGACGTTTGCAATCAGCGGGTACCAAAACAGCGCGGAGAACACGACCGTGTTCAACGGCAAGACTCACGTGGTGTTCCAGAATGCTTACCGCAACACGATCCACGAGCACTGGGCGCTGTCGATGGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
275048bbaa7c02d464a8c9c828799bb11110017febc346547ee8b5c4585fc451
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6397
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic bacteriophages targeting P. aeruginosa isolated from hospital wastewater Nordstrom,H.R., Evans,D.R., Finney,A.G., Westbrook,K.J., Yassin,M.H., Doi,Y. and Van Tyne,D. 2021-07-09 — GenBank