Protein

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Genbank accession
QIG77282.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MEISLARLKITGTSPQNXXXXXXXGNTEWIVDGSELSDISGNSTHVFQDVLEDGTYQFRVTAGTVASGFIEIISNTISVTTDKPNEAPQMPPSYTTWVDSEKNGKYGYLGYMYITQGAASGTSVGRVLALNSPKPAVTYSIDDVDFAIDASTGMITLVNSAKAAGTYYVTITASNIAGSQSTIVPITLVPTAGLTRTYFVDSVNGDDSLNNGKTPATPFKTFGKANGIRGADVFSTYITMYKRGTVYDTPTTTTGHALRNYTTIQAYGDPSQPPPHFITTVPSGFAIGASVSGTLTNVILKDLKITGTQRAISLTDGTGSTFLRLQIEKNSQYGNGIYLHGFVNSNIYHCTLVDGIDGDGMYLRKWRQGRVRWCKFGIPTGTGADNLQITSERKSGMEPADVEVSDNIFRHSVLSNALKGNCVIEGASRVLFERNDCEGNYFCLSSLSSLVTVRDNYLRGAILNDNSFGIGTGAIIHTRDQRWIFNRIEGNWFAMALSGYDDPDGGWQRMDYEILYNHTRKNKAFFKQDRPATGFVTDNIAEQNNNNGFSGSGGAATGYTNASGTFVTPDYPAFTKGPNFVNSVTTTDPVVKPTISGTMTAGSTLTVTVPEIAGATSVVQWLINDQKVLNETGLTFIIPAGQVVNPNMPTYRNTPTVSCAVVYTLSNGATVAVPARYDDGYCWRYIQS
Physico‐chemical
properties
protein length:688 AA
molecular weight: 73469,17870 Da
isoelectric point:5,70774
aromaticity:0,09838
hydropathy:-0,21601

Domains

Domains [InterPro]
DC_0928
ATT
18–136
DC_0928 IPR011050 DC_2066
cd11304
STR
113–188
cd11304
cd11304
STR
115–188
cd11304
QIG77282.1
1 688
Architecture
ATT
STR
RBD
ATT 18-136 | STR 137-571 | RBD 590-682 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG77282.1
1 688
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,7182
Central domain 92 601 511 0,8515
C-terminal 602 688 86 0,7061
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-601
C-terminal
602-688

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM39
[NCBI] 		2509768 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG77282.1 [NCBI]
Genbank nucleotide accession
MN988559 [NCBI]
CDS location
range 150303 -> 152369
strand -
CDS
ATGGAGATCTCCTTGGCACGTCTAAAAATTACAGGTACTAGTCCGCAAAATNNNNNNNNNNNNNNNNNNNNCGGTAATACAGAATGGATCGTTGACGGTTCAGAATTGTCAGATATTTCTGGTAATTCTACTCACGTATTCCAAGACGTGTTAGAAGATGGTACTTATCAATTCCGTGTAACTGCTGGTACGGTAGCTAGTGGATTCATCGAAATCATCAGTAATACGATTAGTGTTACTACAGATAAGCCTAATGAAGCTCCTCAGATGCCTCCTTCTTATACGACATGGGTTGATAGTGAGAAGAATGGTAAGTATGGATACCTAGGTTATATGTATATAACTCAAGGTGCTGCATCTGGTACGAGTGTAGGACGTGTCCTTGCATTGAATTCACCTAAACCTGCAGTCACTTATTCAATTGATGATGTTGATTTTGCTATTGATGCAAGTACAGGTATGATCACTCTTGTCAATTCAGCAAAAGCTGCAGGAACTTATTATGTAACGATCACAGCATCTAATATTGCTGGAAGTCAGAGCACAATTGTTCCTATTACTCTTGTACCGACTGCTGGACTAACAAGAACCTACTTCGTTGATAGTGTCAATGGTGACGATAGTCTTAACAATGGTAAGACTCCTGCTACTCCATTCAAGACCTTTGGTAAGGCTAATGGTATTCGAGGAGCAGACGTTTTCAGTACATATATCACGATGTATAAGCGTGGTACTGTTTACGATACTCCTACGACTACAACAGGTCACGCACTTCGCAATTATACAACAATTCAAGCTTATGGTGACCCTTCACAACCACCTCCTCACTTTATAACCACAGTTCCAAGTGGATTTGCAATTGGTGCATCAGTATCTGGTACATTAACTAACGTTATTCTTAAAGATCTGAAGATTACTGGCACACAACGAGCGATCAGTCTTACGGATGGTACAGGAAGTACATTCTTGCGACTCCAGATTGAGAAGAATAGTCAGTACGGTAACGGTATCTACTTACATGGATTCGTTAATAGTAATATCTATCATTGTACACTTGTTGATGGTATTGACGGTGACGGAATGTATCTCCGTAAATGGAGACAAGGTCGAGTTCGTTGGTGTAAGTTTGGTATTCCTACAGGTACTGGAGCAGATAATCTTCAGATCACCTCCGAACGCAAGTCTGGTATGGAACCTGCTGACGTAGAAGTCTCAGACAATATCTTCAGACACTCAGTACTTTCGAATGCTCTTAAAGGTAACTGCGTTATTGAAGGTGCAAGTAGAGTTCTATTCGAACGTAACGACTGTGAAGGTAACTACTTCTGCTTGTCATCACTATCAAGTCTCGTTACCGTACGTGATAACTATCTTCGTGGTGCTATATTGAATGATAACTCATTCGGTATCGGTACTGGTGCAATCATTCATACTCGTGATCAACGATGGATTTTCAATCGTATCGAAGGTAACTGGTTTGCTATGGCACTATCTGGATATGATGACCCAGACGGTGGATGGCAGCGTATGGACTATGAAATCCTTTATAACCATACGCGTAAGAATAAAGCATTCTTCAAGCAAGACCGTCCTGCAACAGGGTTCGTTACAGACAATATCGCTGAACAGAATAACAATAATGGATTCTCAGGAAGTGGTGGAGCAGCTACCGGTTATACAAACGCTAGTGGTACATTCGTCACACCAGACTACCCTGCATTCACGAAGGGTCCTAATTTCGTTAATTCAGTAACGACTACTGATCCTGTAGTTAAACCTACAATCTCTGGTACGATGACTGCAGGATCTACTCTGACAGTGACTGTTCCTGAAATTGCTGGAGCAACATCTGTTGTTCAATGGCTAATTAATGACCAGAAAGTCCTTAATGAAACAGGATTGACGTTCATTATTCCTGCTGGACAAGTTGTTAATCCGAATATGCCAACATATCGTAACACACCAACTGTATCATGTGCTGTAGTTTATACGCTCTCAAATGGAGCAACAGTAGCTGTACCTGCTCGTTATGATGACGGATATTGCTGGAGATACATACAGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
af5a1a5aebb78743d1a5ad5895e98dafc24b3ec0de4479839ea4d0150eba2ca0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7832
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank