Protein

View in Explore
Genbank accession
YP_007674039.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MTLDHDAIKKAYPNATKIDDGEGVFDITGKEIVIDNSLVTAARTTLDNEASAILYQRQRTGIDGTTDTIYPDLGEQFDLLFKDIAAGTLTTSGNLYTALKAVKDKYPKPS
Physico‐chemical
properties
protein length:110 AA
molecular weight: 11956,24630 Da
isoelectric point:4,67543
aromaticity:0,07273
hydropathy:-0,35909

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-184
[NCBI] 		889955 No lineage information
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674039.1 [NCBI]
Genbank nucleotide accession
NC_020847.1 [NCBI]
CDS location
range 2331 -> 2663
strand +
CDS
ATGACTTTAGACCATGATGCAATAAAAAAAGCATATCCTAACGCCACAAAAATTGATGATGGCGAAGGTGTTTTTGATATTACAGGTAAGGAAATCGTAATTGATAATAGTCTTGTCACTGCTGCAAGAACAACTTTAGATAATGAAGCCTCTGCAATTCTTTACCAACGTCAAAGAACAGGGATTGATGGGACAACAGACACAATTTATCCTGATCTCGGTGAACAATTTGATTTACTATTTAAAGACATCGCTGCGGGTACTTTGACAACCTCTGGAAATCTATACACAGCCCTAAAAGCCGTAAAAGACAAATATCCAAAACCAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee2bfe3ac711ec4940605ccc06b979db4ac61db36bb7d8e2d69dfcdb7e75f83b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9627
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-184 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank