Protein

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Genbank accession
XRL22944.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALTSLVKVPAKAVTLKPMGSVQDAIVTVHVDAFGADPTGQEDSTQAVIDAQNSVNAITNSLFVGSERAYARVVFGNGRYILGDVPIKSGFCYAGQGSFATTILPKVGASWCFKSLGTEPYETAGPSKRLFRAEFEGLHIGCGMVNVFSDYPIPTGVGAIYIAHASYIKMDDVYIRHMDGPGFWAESLWDSEIYNLRIMYVGNARNKTSTTTIGWGLYIGAGNAPTDGSNANRFYGLHIEGCPAQLCVDKRSRHNFFLGGKLEWVRYNDISQCSASIISGVDGLVFSDMELSSSQIITPMFDIVGTTTVIDTSADDVSDPECDHSRGVVFENPSIIDSNALSGWYFRYKSDRGPLQIKGGYGRHIRTLFSGSDLELDGFTTVQSGGSPNGIIIGTGNCNIRGLTMMRHRSTPGLGVLGMTLIGAGNRLKDCNFSTPYGSATDGNTWILTNSNSEVVVDGLVLGGATQYGISGTVSTQWSRLRNTSTASGATYGEVVRGGVRYVGLPMQLYSDSGRAAAYEVVVAPDATVTTPSIIGGGTRVNIRCTDLSGVAVAAGDVFYDVGLAGAVKIVDMAGNLEVTSAGASGDGQIHLVRAADTLAITNRTTVDIRVNLLALTAR
Physico‐chemical
properties
protein length:619 AA
molecular weight: 65591,18610 Da
isoelectric point:5,62617
aromaticity:0,08401
hydropathy:0,03037

Domains

Domains [InterPro]
DC_1709
STR
4–617
DC_1709
IPR012334
STR
15–341
IPR012334
IPR011050
STR
27–336
IPR011050
XRL22944.1
1 619
Architecture
STR
STR 4-617 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRL22944.1
1 619
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9602
Central domain 44 504 462 0,9901
C-terminal 505 619 114 0,9845
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-504
C-terminal
505-619

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnD_TUMS_K1
[NCBI] 		3410929 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRL22944.1 [NCBI]
Genbank nucleotide accession
PV231794.1 [NCBI]
CDS location
range 37940 -> 39799
strand +
CDS
ATGGCCCTTACTAGCTTAGTTAAGGTACCCGCAAAAGCCGTGACACTAAAGCCTATGGGTTCTGTACAGGACGCCATAGTAACAGTACACGTAGATGCCTTTGGGGCGGACCCTACTGGCCAAGAAGATTCTACGCAGGCGGTTATTGATGCTCAGAATTCGGTTAATGCCATTACAAACAGTTTATTTGTGGGTTCGGAGAGAGCTTACGCGCGCGTAGTGTTCGGCAATGGCCGGTATATACTAGGTGATGTACCTATTAAATCCGGCTTCTGCTATGCTGGGCAGGGTAGCTTTGCTACTACTATTCTACCGAAAGTAGGGGCTTCCTGGTGCTTTAAATCCCTAGGCACTGAGCCTTATGAAACCGCTGGCCCGTCCAAGCGCCTATTCCGTGCTGAGTTTGAAGGTCTGCACATCGGGTGTGGTATGGTAAACGTATTCAGCGATTACCCAATCCCTACTGGAGTAGGTGCAATTTATATTGCCCATGCGTCCTATATTAAGATGGATGATGTCTATATCCGACATATGGATGGCCCCGGTTTCTGGGCGGAGTCTTTGTGGGATAGTGAGATTTATAACCTGCGTATTATGTATGTCGGCAATGCCCGTAATAAAACGTCCACCACTACTATTGGTTGGGGCCTTTATATTGGAGCAGGCAATGCGCCCACTGATGGGTCCAACGCCAACCGCTTCTACGGCTTACACATTGAGGGGTGCCCGGCGCAGTTGTGCGTAGACAAACGCAGTCGTCACAACTTCTTCCTGGGCGGTAAGTTAGAGTGGGTGCGGTATAACGATATCAGCCAGTGTTCCGCGAGCATAATTTCTGGTGTAGACGGCCTGGTGTTCTCGGATATGGAGTTAAGTAGCTCTCAAATCATTACGCCGATGTTTGATATCGTAGGAACTACTACAGTTATTGACACTAGTGCTGATGATGTGTCTGACCCAGAGTGCGACCACTCCCGTGGGGTTGTATTCGAAAACCCATCTATAATTGACAGTAACGCCTTATCTGGATGGTACTTTAGGTACAAATCAGACAGGGGTCCTCTGCAAATTAAGGGTGGGTACGGCAGGCATATACGTACGCTGTTCTCTGGTTCTGATTTAGAGCTGGACGGCTTTACTACTGTACAGTCTGGTGGTTCCCCTAATGGCATCATTATTGGTACCGGGAACTGCAACATTCGTGGCCTGACCATGATGCGACATCGCAGTACTCCAGGCCTAGGCGTGCTGGGTATGACCCTAATTGGTGCTGGGAACCGGTTGAAGGATTGTAATTTCAGTACTCCTTATGGTTCAGCAACTGACGGCAACACCTGGATCCTGACTAACTCTAACTCGGAAGTAGTAGTGGACGGGTTGGTGTTGGGTGGGGCTACGCAGTACGGTATCTCCGGCACGGTCTCTACGCAATGGTCTAGATTACGTAACACCTCCACGGCGAGTGGGGCAACCTACGGGGAAGTGGTGCGTGGCGGTGTACGTTACGTGGGCCTGCCTATGCAGCTATATTCTGACTCTGGTCGCGCCGCTGCTTACGAGGTAGTTGTAGCTCCTGATGCAACAGTTACCACTCCAAGCATTATCGGCGGAGGTACGCGCGTAAACATTAGGTGCACTGATCTGAGTGGTGTAGCAGTGGCCGCGGGGGACGTGTTCTACGATGTAGGGTTAGCTGGTGCGGTTAAGATTGTCGACATGGCTGGCAACTTAGAAGTCACTAGTGCAGGGGCATCTGGGGACGGGCAAATTCACCTTGTGCGCGCGGCTGATACACTGGCTATCACTAACCGTACAACTGTGGATATTAGGGTTAACCTCCTGGCACTCACTGCACGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f7b99025d648252f1012c6a6061b80830380116ebaa1568d7dcbc667a22e5982
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7375
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and genome analysis of a new Klebsiella phage vB_KpnD_TUMS_K1 Torkashvand,N., Kamyab,H., Sepehrizadeh,Z. and Shahverdi,A.R. 2023-04-25 — GenBank