Protein

View in Explore
Genbank accession
XWX36433.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MDKTPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYALESKHIHIDNCEAYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGIEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNTSAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYRNVSVNNFTAIGDSDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVSLNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGVTADNYSTSAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKKGHTQLIMNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSTYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIRKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:687 AA
molecular weight: 74127,14620 Da
isoelectric point:7,62924
aromaticity:0,08151
hydropathy:-0,47496

Domains

Domains [InterPro]
IPR012334
STR
1–391
IPR012334 IPR021865
IPR011050
STR
9–325
IPR011050 IPR006626 G3DSA:2.40.300.10
IPR006626
Unmapped
57–79
IPR006626 IPR039448 IPR006626 G3DSA:4.10.80.40
IPR006626
Unmapped
99–121
IPR006626 IPR006626 IPR006626 IPR006626
DC_0616
STR
167–458
DC_0616
XWX36433.1
1 687
Architecture
STR
CHP
RBD
STR 1-458 | CHP 459-511 | RBD 512-683 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX36433.1
1 687
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0041
Central domain 11 468 459 0,9677
C-terminal 469 687 218 0,9231
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-468
C-terminal
469-687

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_91
[NCBI] 		2815643 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX36433.1 [NCBI]
Genbank nucleotide accession
MZ417352 [NCBI]
CDS location
range 40101 -> 42164
strand -
CDS
ATGGATAAAACACCAGCAGAGAACATAGGTATCACTAACTTAAAAATGAGTGGCGGAGCTGAAAACATTTCTTTAGAAAGTTTTTCGTTCAATGGGAATAAGTTTAGACAAAATAAAACACTTAAAGCTACCGGTGGCTCTCGTTCATCTAACATTAGATTTGCGGGTGTAACTAATGGATATATCTATAACGTTAAATCATATGACGCTTTACTACACTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAAGGCGATGGAAACAGAGTGCCTTACGCATTAGAAAGTAAGCATATTCATATTGATAATTGTGAGGCATATGGTTGCGGAGATGATGGTATCACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAATGGTATAGAAATTGACGATGGCTCACAATATGTGTTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCACACAGTAACACAAGTGCTGCAAGTGGCGTATTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCATCATAGAGCTAAAACGGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAGAAATGTTTCTGTAAATAACTTTACAGCTATAGGTGATAGTGATTTCGGAAAATTAGAAGGTGGAAAACTAGATAAAAAACAACCAGCAATAGCCATCCAATTCATGTCCGAAAACATCTCGCTTAATAATATTAATGTGCGTAACTTTAAAAATGCAGAAGTAGATATTAGATTATTTGGCGGAGATAATAGACCGTCTAGAGTATCACTAAATAACATAAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGACACTAAAATAACTAATTGTAACTTACACGGCAATGGTTCAGGTATAGGATTACGTTTGACAAATAACCACGCTATGATTAGCGGCGTCACAGCTGATAATTATTCAACTTCTGCATGGATAGCAGGAGAAAAGTACGACACACCACCTACAGTAGGAAAAGGCGGCGCTAGTATAGCGTCTACAGGAAGTGCTGGTGTAGCAAACGCTAGTGCAGTTATTGCATCTACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGTTCACGTAGCGGTATTATCAATTCACTTAATTCTGAAACTGATAAAAAAGGCCATACACAACTGATTATGAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCACTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAAGAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCCGCGTTGGTAGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAAAACGAATATGGTGTGACTATCACGAATAGAAAACAAGTTGAATTTGTAGATGATGAGGGCAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGATAACTTCTGAATACACTGAAGAACGTGGCTGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f9b03276a2714e3b01cabf6e566b16513f412d623545d1c64561c17d082b014c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9365
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank