Protein

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Genbank accession
WPK39161.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGYELRLSNNYYQNRELTSFPSYQEVVSDWSKATSVNLYDAWEGKAIGGVTAGWSATSILSYTRTPDPISTNAASLYSYALYMDQVSDFNITIKISSNSIRNNRLGLCVAGQKGKYISAVRSLGNTSSSGSGRNWELILDNNKTRTILSSKTIGINSPAGATSTSSTGYLGWSNRYTIINVIRENNKITAKCSDWNSNVIIDNSVFTIDLNDDTLTDFKTSALFGFVSGNQDLCTFEVLSFSAKCYNKIPGLNVPDNYISSNLLSISMPGYNSAGYEKAFSESMIWMVENFASSSPPQNAIKGQLWYKTEGPGTQGSFYVYVGEPGEFTNLAKWHPLTQGTLDLLSAHINDKNDPHQVTKEQIGLGLVDNVNTFDKTLNLADVLNKAAARNNLSIYSKNETYNSQEYNNLFVDKSNSSSPDSELLGGLDSTAYVKKQTPFVTSSITSSVTSGDVIVMNDNSFRLAYKPNYGTSLILGGTVTDIHSQNNTTAVSMNMVTNNTLDNGIQFVFYNTGAINTPLVANSIISFKADNLYIGSGNLAFHDRRPPTAAEVGALAWNGTAVDSYLLNGKINSTSPGANTIAVRYTPSNLPDANGGYLSASSFSMTYTNADPMSVNAQVTFRNNNTNDNYVRFASRDQLVTYLGYDWKVEIDMPKGLASFSDTNLTGGSFFVINTLNLSITKLGTGLYRFYFTTLRPTNTNYAVMTQCMSEGHVGAIEGDVVNYSKAFRAVSIYCYNKTLSYFDVASTLNSNFNNNDGTGYQDYSREYDDPGLASLQVYFSSWVNL
Physico‐chemical
properties
protein length:787 AA
molecular weight: 86167,49600 Da
isoelectric point:5,22222
aromaticity:0,11309
hydropathy:-0,29327

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK39161.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 32 32 0,6715
Central domain 33 231 200 0,4951
C-terminal 232 787 555 0,4437
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-32
Central
33-231
C-terminal
232-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Cassandra
[NCBI] 		3092175 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK39161.1 [NCBI]
Genbank nucleotide accession
OR805292 [NCBI]
CDS location
range 259889 -> 262252
strand -
CDS
ATGGGTTACGAATTACGTTTATCAAATAATTATTACCAAAATAGAGAACTAACTTCTTTTCCTAGTTACCAAGAAGTTGTTTCTGATTGGTCAAAAGCTACATCAGTTAACTTGTATGATGCATGGGAAGGAAAAGCAATAGGCGGCGTCACTGCAGGATGGTCAGCTACTTCTATTCTTTCTTACACAAGAACTCCCGATCCTATATCAACTAATGCAGCATCGTTATATAGCTATGCGTTATACATGGATCAAGTTAGTGATTTTAATATTACAATAAAAATATCTAGCAATTCTATAAGAAATAACAGGTTAGGTTTGTGTGTTGCTGGACAAAAAGGAAAATATATATCTGCTGTCCGGTCATTAGGTAACACATCTAGCAGCGGATCCGGAAGGAATTGGGAACTAATTTTAGATAACAATAAAACTAGAACGATTCTTTCTAGTAAAACAATAGGAATTAATAGTCCTGCTGGGGCTACTTCTACATCATCTACAGGGTATCTCGGTTGGTCAAATAGATATACAATTATTAATGTAATTAGAGAAAATAATAAAATAACAGCTAAGTGTTCCGACTGGAATTCTAACGTAATAATAGATAACTCGGTGTTTACTATAGATCTAAACGATGATACACTAACTGATTTTAAAACATCTGCATTATTTGGATTTGTATCAGGTAATCAGGATTTATGTACTTTCGAGGTATTATCTTTTTCTGCAAAGTGCTATAACAAGATTCCAGGATTAAATGTACCTGATAACTATATTTCTTCTAACTTACTTTCTATATCTATGCCAGGATATAATTCGGCAGGTTACGAAAAAGCATTTAGTGAATCCATGATATGGATGGTAGAAAACTTTGCTAGTTCTTCTCCTCCCCAAAATGCTATAAAAGGACAACTATGGTATAAAACAGAAGGACCCGGTACACAAGGATCATTTTATGTATATGTAGGAGAACCCGGTGAATTTACAAATCTAGCAAAATGGCATCCATTAACTCAGGGCACATTAGATTTACTCAGTGCTCACATTAATGATAAAAACGACCCTCATCAAGTTACAAAAGAACAGATAGGTCTAGGGTTAGTAGATAACGTAAATACATTCGATAAAACACTGAACCTAGCAGATGTTTTAAATAAGGCAGCCGCTAGAAATAATTTATCTATATATAGTAAAAACGAAACATACAATTCCCAAGAATATAATAATCTATTCGTAGATAAATCAAATAGTTCTTCTCCAGATTCAGAATTACTAGGCGGGTTAGATAGCACAGCTTACGTTAAAAAACAAACGCCGTTTGTTACTTCGTCTATAACTTCATCTGTTACATCAGGAGATGTAATAGTAATGAATGATAATAGTTTCAGATTAGCATATAAACCCAATTACGGAACTAGTCTAATACTAGGCGGTACTGTTACAGATATTCATTCTCAAAATAATACTACTGCTGTTAGTATGAATATGGTTACTAACAATACATTAGATAACGGAATACAGTTTGTCTTCTATAATACTGGTGCAATAAATACACCATTAGTAGCAAATAGTATCATATCATTTAAAGCAGACAATCTATATATAGGTTCTGGTAATTTAGCATTCCACGACAGACGGCCACCGACCGCTGCCGAAGTAGGAGCATTGGCGTGGAACGGTACTGCTGTAGATTCATATTTACTTAACGGTAAAATAAATTCAACTAGTCCGGGTGCCAACACAATAGCAGTAAGATATACACCTTCTAATCTTCCTGATGCAAACGGCGGGTATCTATCTGCATCTTCATTTAGTATGACATACACTAATGCAGACCCTATGTCAGTAAATGCCCAAGTAACATTTAGAAACAATAATACCAATGACAATTATGTTCGTTTTGCTAGCAGGGACCAATTAGTAACTTATTTAGGATATGACTGGAAAGTAGAAATAGATATGCCAAAAGGTCTGGCATCATTCTCAGACACAAATCTTACGGGCGGTTCCTTCTTTGTAATAAACACTTTAAATTTATCTATAACAAAATTAGGAACAGGATTATATAGATTCTATTTTACTACTTTGCGTCCAACAAATACAAATTATGCTGTTATGACACAATGTATGTCAGAGGGGCACGTAGGTGCCATAGAGGGAGATGTTGTTAACTATTCTAAAGCATTTAGAGCAGTGTCTATATATTGCTATAACAAAACATTATCATACTTTGACGTTGCTAGTACATTAAACAGTAATTTTAATAACAACGACGGAACCGGTTATCAAGATTATTCAAGGGAATATGACGATCCGGGATTAGCATCATTACAAGTATATTTTTCATCCTGGGTAAATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
90f21c0bb090311fef1f6c0c107fcc193450a0b3783e5f788d6bf8d971f67f19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5207
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank