Protein

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Genbank accession
YP_009622287.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MSSKKAKAPVPVTAASVEETSIETTPVVTEEKLSYVELGNGIVDRDGKIHTVKEHAVGVFKLKDVIKDNLSFLHSFNQAKSWLTQNVGFRPFKGDDSTPLEETELYQINVDDKTTVFMDEDSVVKFDKNKPHDFYWYGDEDKNTGPVVLIVIGSHIDLGEVLHSTHNNGYSLLYNLTGRINTLKSSVVLSDNQGRRSEIDCGSIINSEVTFNGYRFKVTSLDNVTIANSFVDMEGYVSDAAIKDSHISLNKYSAISNADIYRSHIMCDAFNVGRRSKPGAYVPRLSVHNLHLYFNGDSFDIRRGFEYDTIGGGYNYQSLSFIPLQRNADTTEFMLYAPKLEDRDYATPTAKITWDMDKSELRKIVKSLIDPRSKSDDSPLAGIGTIQSSIVEEAVSVLYNRLRIIKQTRFAEEL
Physico‐chemical
properties
protein length:414 AA
molecular weight: 46475,59810 Da
isoelectric point:5,53239
aromaticity:0,09420
hydropathy:-0,38575

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009622287.1
1 414
Domain Start End Length (AA) Confidence
N-terminal 1 41 41 0,9216
Central domain 42 306 266 0,8558
C-terminal 307 414 107 0,4816
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-41
Central
42-306
C-terminal
307-414

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Aphrodite1
[NCBI] 		2070057 Uroviricota > Caudoviricetes > Chimalliviridae > Aphroditevirus > Aphroditevirus aphrodite1
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009622287.1 [NCBI]
Genbank nucleotide accession
NC_042100 [NCBI]
CDS location
range 200250 -> 201494
strand +
CDS
ATGTCTAGCAAAAAAGCAAAAGCACCAGTTCCTGTAACCGCTGCATCAGTGGAAGAAACGTCTATCGAAACTACACCTGTGGTTACAGAAGAGAAACTTTCTTATGTTGAGTTAGGGAATGGGATTGTTGACCGAGATGGTAAAATCCATACCGTTAAGGAACATGCGGTTGGTGTCTTTAAACTCAAAGATGTGATTAAAGACAACCTCTCTTTCCTCCACTCATTTAACCAAGCGAAATCATGGTTGACTCAAAATGTTGGGTTTCGTCCATTTAAGGGGGATGATTCCACTCCTTTGGAAGAAACTGAACTTTATCAGATTAACGTAGATGATAAAACTACGGTTTTCATGGATGAAGATTCCGTGGTGAAATTCGATAAAAATAAACCACATGATTTCTATTGGTACGGAGATGAAGACAAAAACACCGGACCAGTTGTACTTATTGTGATCGGGTCTCACATCGATCTTGGTGAAGTTTTACACTCAACTCACAATAATGGTTATTCGTTGCTTTATAACCTGACCGGTAGAATCAACACCTTAAAAAGCTCCGTTGTGTTATCCGATAATCAAGGTCGTCGTTCTGAAATCGATTGTGGTTCAATCATCAATTCCGAAGTCACATTCAATGGATACCGATTTAAGGTAACCTCGTTGGACAACGTGACGATTGCCAATAGTTTCGTTGACATGGAAGGGTATGTGAGTGATGCTGCTATTAAAGATTCGCACATTTCCTTAAACAAATATTCAGCCATCAGTAATGCAGATATCTACCGCTCACACATCATGTGTGATGCTTTCAACGTTGGTCGACGTTCAAAACCCGGTGCGTATGTTCCGCGTTTATCAGTTCATAATCTCCATCTATACTTTAATGGTGATAGCTTTGACATTCGTCGTGGGTTTGAATACGACACCATTGGCGGTGGCTATAATTACCAGTCTCTTTCGTTTATCCCACTTCAACGTAATGCGGATACGACAGAATTCATGTTGTATGCACCAAAACTTGAAGATCGTGATTACGCCACACCAACCGCTAAAATCACATGGGATATGGATAAATCAGAACTCCGTAAGATCGTCAAGTCACTGATCGATCCTAGAAGTAAATCAGACGATTCTCCACTAGCTGGCATCGGAACTATCCAGTCTTCTATTGTTGAAGAAGCGGTATCGGTTCTGTATAACCGTTTACGCATCATTAAGCAAACACGCTTTGCTGAAGAACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
27e45362317daa855eb7a9b9ba43ea4101c0f3b566182a6d44573543dbd8711d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4351
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage resistance in Vibrio sp. unravels a complex metabolic adaptation strategy Skliros,D., Kalatzis,P.G., Katharios,P. and Flemetakis,E. 2021-04-10 — GenBank