Protein

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Genbank accession
YP_007676559.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,69
Protein sequence
MGMNIWDSRESGSTVVTDEKGVTRLAAEGDSLVASCEEDQLIVENPTCTEVISLGDGQYLRGEKGETGEEPDHEWIDTSLRFRKPDGSWGWLVDLQGEKGEKGDQGIQGPQGIGIEGPQGNDGITRYAWVKYADTTTPAPEEMYQTPDGRIYFGIAYNRLLDEGEGDPQEFDYTQYKWSKIQGTDGIPGTPGGVGPTGPAGVGFTWIGEFPEHPTAEDIGRPLEDGDTYFNTTDNKVYTYAGGWHTMLESGGEGPIGPQGAPGGGFEYQGEFTSSPSGALVNWLYRNINNDLFYMYDGTAWILATSDGKDSPDGAPCGNGLRFFTTYHDSATTPARPTLDGDTNGWNPNAHSFAPGTIKWVSQKIATEPELGVWNDPIDISTHEYRGPVGFRGSQSILIPIPGWNGNWDDNIAASACTGGAPQEWDIVTMYKSEDPAVQETRRWAFNPQNSIWEWLVYNYVFLGDVLVDGTLDAQKINVNSTLTVGTGNNVAKVSGEDNIRIAVGNADKSLAPFRVFQDGSVIIDNPPSNINNDDLDVPTTYRQASAPTAPIVTGSMWYETDNQNKPYRWNGTVWQEVRDDGVITDAKANGTVYPDQDNLSISGNYVAGISGWAIDSNGNSEFNNSTFRGDVYASSLTLTGSGSQLTSDNYSPGLEGWTINSNGTAEFNDVTVRGTGYFTDGVFDGTIYAENISGDVVSAIVKDNPVSYTGFTPVNTWRTVATPVTILNSRPYERNLRLTVSNGGTGFSIYINSDESFNNTIMRFRLINTTTNNIAWEYEYTFDASGGGRLTQGFFPSIDAVIPANETAGTYELQVSSSREIDFIRYMYRELGISWQAITSSVVGHLFMNSKELS
Physico‐chemical
properties
protein length:855 AA
molecular weight: 93252,69120 Da
isoelectric point:4,27670
aromaticity:0,11111
hydropathy:-0,50351

Domains

Domains [InterPro]
DC_2056
STR
4–185
DC_2056 DC_2093 DC_1333 DC_0582 DC_1439
DC_1439
RBD
638–855
DC_1439
YP_007676559.1
1 855
Architecture
STR
STR
STR
RBD
STR 4-185 | STR 208-259 | STR 288-575 | RBD 593-855
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676559.1
1 855
Domain Start End Length (AA) Confidence
N-terminal 1 407 407 0,9973
Central domain 408 693 287 0,0836
C-terminal 694 855 161 0,9608
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-407
Central
408-693
C-terminal
694-855

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBP32
[NCBI] 		754072 Uroviricota > Caudoviricetes > Schitoviridae > Stoningtonvirus > Stoningtonvirus VBP47
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676559.1 [NCBI]
Genbank nucleotide accession
NC_020868 [NCBI]
CDS location
range 30866 -> 33433
strand +
CDS
ATGGGAATGAATATTTGGGACTCACGAGAGAGTGGGTCTACTGTAGTCACAGATGAAAAGGGAGTCACTAGGTTGGCTGCCGAAGGAGATTCTCTAGTTGCTTCATGTGAAGAAGATCAACTTATTGTAGAGAATCCAACATGCACAGAGGTTATCTCTTTAGGGGATGGCCAGTATTTGCGTGGGGAAAAAGGTGAGACTGGTGAAGAACCAGATCATGAATGGATAGATACATCATTACGTTTCCGTAAACCTGATGGTTCTTGGGGATGGTTGGTAGATCTTCAAGGTGAGAAAGGCGAGAAAGGTGACCAAGGTATTCAAGGTCCTCAGGGTATTGGTATTGAAGGTCCACAAGGTAATGATGGTATTACTCGTTATGCTTGGGTGAAGTATGCAGATACTACTACTCCGGCACCAGAAGAAATGTATCAGACTCCTGATGGTCGTATCTATTTTGGTATTGCGTATAACAGGTTGTTAGATGAAGGTGAGGGTGACCCACAAGAGTTTGATTACACTCAATACAAATGGTCAAAGATTCAAGGTACGGACGGCATTCCCGGTACTCCGGGCGGTGTAGGACCAACAGGTCCTGCCGGTGTAGGCTTTACTTGGATAGGTGAATTCCCTGAACATCCTACTGCTGAGGATATTGGTCGTCCATTAGAGGATGGAGATACATACTTTAATACTACCGATAACAAAGTATATACCTATGCTGGTGGGTGGCACACAATGCTTGAGTCAGGTGGCGAAGGCCCAATTGGTCCTCAAGGTGCACCGGGTGGCGGTTTTGAATATCAAGGTGAGTTTACTTCTTCTCCTTCTGGAGCATTAGTTAACTGGCTATACCGTAATATCAATAACGATCTGTTCTATATGTATGATGGTACTGCATGGATCTTAGCTACTTCAGACGGTAAGGACTCTCCAGATGGAGCTCCTTGTGGTAATGGCTTACGCTTCTTTACTACTTATCACGATTCAGCTACTACTCCTGCTCGTCCTACGTTGGACGGTGATACTAATGGTTGGAACCCTAATGCTCATTCTTTTGCACCGGGTACAATCAAATGGGTATCTCAGAAGATTGCTACTGAACCTGAGTTAGGTGTATGGAATGATCCAATTGATATCTCAACTCATGAGTATCGAGGACCTGTAGGTTTCCGTGGCTCACAATCAATTCTAATTCCAATTCCGGGATGGAACGGTAACTGGGATGACAATATTGCTGCGTCTGCATGTACAGGTGGTGCCCCACAGGAATGGGATATCGTTACAATGTATAAATCAGAGGATCCAGCAGTACAGGAAACACGTCGTTGGGCTTTTAACCCTCAGAACTCTATTTGGGAATGGTTGGTATATAACTACGTCTTCTTAGGTGATGTTCTAGTTGATGGTACGTTGGATGCACAGAAGATTAACGTTAACTCTACACTTACTGTAGGTACAGGTAACAACGTAGCTAAAGTATCTGGTGAAGATAACATTCGTATTGCTGTAGGTAATGCAGATAAGTCGTTAGCACCATTTAGAGTATTCCAAGATGGTTCAGTTATTATTGATAATCCACCATCGAATATTAATAACGATGACTTAGATGTTCCTACTACATACCGACAAGCTAGTGCTCCAACAGCTCCTATTGTTACAGGCTCTATGTGGTATGAGACGGATAACCAGAATAAACCTTATCGTTGGAATGGTACTGTATGGCAAGAAGTACGTGATGATGGTGTTATTACAGATGCTAAAGCCAATGGTACTGTATACCCAGATCAGGATAACCTAAGTATTAGTGGTAACTATGTGGCAGGTATAAGTGGTTGGGCAATTGATAGTAATGGTAACTCAGAGTTTAATAATAGTACCTTCCGTGGTGATGTATACGCTAGTTCTCTTACTCTAACAGGTAGTGGATCTCAGCTAACATCAGATAACTATAGTCCGGGTTTAGAGGGATGGACAATTAATAGTAATGGTACTGCCGAGTTTAATGATGTTACTGTTCGAGGTACTGGTTACTTTACTGATGGTGTGTTTGATGGAACTATTTATGCAGAGAACATCTCTGGTGATGTGGTATCAGCAATAGTTAAAGATAACCCTGTGTCGTACACCGGATTTACTCCAGTAAATACTTGGAGAACTGTAGCTACTCCTGTAACCATCTTGAACTCTAGACCATACGAACGTAACTTACGTTTAACAGTTTCTAATGGTGGTACAGGGTTTTCTATATATATTAACTCGGACGAGAGTTTTAACAACACGATTATGAGATTCCGTTTAATAAATACAACCACTAACAATATTGCATGGGAATACGAGTATACCTTTGACGCAAGTGGTGGTGGCCGTCTTACTCAAGGATTCTTTCCTTCAATTGATGCAGTTATTCCTGCTAATGAGACTGCAGGTACATACGAACTACAAGTATCATCCAGTCGTGAAATTGACTTTATTCGGTATATGTACAGGGAATTAGGTATTAGTTGGCAAGCAATAACATCTAGTGTAGTAGGCCACTTATTTATGAACTCTAAAGAGTTATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
99d52ff735a7585afc3c31ee466c6be7b981df54f4620d16ae90aef926058b9b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6530
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBP32 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank