Protein

View in Explore
Genbank accession
QQV89131.1 [GenBank]
Protein name
tail tube protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MPLSTRSIKSLITQSIKNLKGGISQQPDILRFSDQGEAQVNCWSSESDGLQKRPPTVFKRRLNIDVGSNPKFHLINRDEQEQYYIVFNGSNIQVVDLSGNQYSVSGAVDYVKSSNPRDDIRVVTVADYTFVVNRKAVVKGGSEKSHSGYNRKARALINLRGGQYGRTLKVGINGGVKVEHKLPAGNDAENDPPKVDAQAIGAALRGLLVAAYPTFTFDLGSGFLLITAPSGTDINSVETEDGYANQLISPVLDTVQTISKLPLAAPNGYIIKIQGETNSSADEYYVMYDSNTKTWKETVEPGVVTGFDVTTMPHALVRQSDGSFEFKTLDWSKRGAGNDDTNPMPSFVDAAINDVFFYRNRLGFLSGENVIMSRSASYFAFFPKSVATLSDDDPIDVAVSHHRISILKYAVPFSEQLLLWSDEVQFVMTSSGVLTSKSIQLDVGSEFALGDNARPFAVGRSVFFSAPRGSFTSIKRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGTGTENYICVNSTGAYNRIYIYKFLFKDGVQLQASWSHWEFPKADKILASASIGSTMFIVRQHQGGVDIEHLKFIKEATDFPSEPYRLHVDSKVSMVIPVDSYNADTYKTTVDIGSAYGGNAPSPGRYYLIDSQGAYVDLGDLTSISTVVILNGDWSGRTVFIGRAYLMSYKFSRFLIKIEDNSGTQSEDTGRLQLRRAWVNYRDTGALRLIVRNGEREFVNTFNGYTLGQQTIGTTNIGDGQYRFAMNGNALTTSLTLESDYPTPVSIVGCGWEASYAKKARSV
Physico‐chemical
properties
protein length:793 AA
molecular weight: 87179,66150 Da
isoelectric point:5,96874
aromaticity:0,10593
hydropathy:-0,25448

Domains

Domains [InterPro]
IPR058003
TTP
10–792
IPR058003
QQV89131.1
1 793
Architecture
TTP
TTP 10-792 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQV89131.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9802
Central domain 140 338 200 0,1057
C-terminal 339 793 454 0,1766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-338
C-terminal
339-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB Seyj3-1
[NCBI] 		2801482 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQV89131.1 [NCBI]
Genbank nucleotide accession
MW416012 [NCBI]
CDS location
range 25051 -> 27432
strand -
CDS
ATGCCACTAAGTACTCGATCAATCAAGAGCCTTATTACTCAATCAATAAAGAACCTTAAAGGTGGCATTAGCCAACAGCCTGATATACTGAGGTTCTCAGATCAAGGCGAGGCACAGGTTAACTGCTGGTCATCCGAGAGTGATGGCCTACAGAAGCGCCCACCTACAGTCTTCAAGCGACGACTTAACATCGACGTTGGGAGCAACCCTAAGTTCCACCTGATTAACCGTGACGAGCAGGAGCAGTATTACATCGTGTTCAATGGGTCCAACATTCAGGTAGTTGACTTGAGTGGTAATCAATACTCAGTGTCAGGTGCGGTAGACTACGTTAAGTCCTCCAACCCACGAGATGACATCCGTGTCGTTACCGTTGCAGACTATACGTTCGTCGTTAACCGTAAGGCTGTCGTCAAAGGTGGAAGCGAGAAGTCACACTCTGGTTATAACCGCAAAGCACGAGCTTTAATCAACCTGCGTGGTGGGCAGTATGGTCGAACCCTTAAGGTGGGAATAAACGGAGGAGTTAAGGTCGAGCATAAGCTACCAGCAGGTAATGATGCCGAGAATGACCCACCTAAAGTGGACGCTCAGGCTATCGGTGCAGCTCTGAGAGGCCTTCTTGTTGCTGCCTACCCTACCTTCACGTTCGACCTTGGGTCTGGATTCCTGCTAATAACAGCTCCTTCAGGTACTGACATTAACTCAGTTGAGACGGAGGATGGGTACGCTAACCAGCTAATCAGCCCAGTCCTAGACACGGTGCAGACAATCTCTAAGCTGCCTCTTGCGGCTCCCAATGGGTACATCATTAAGATTCAGGGTGAGACCAACAGTAGCGCCGATGAATACTACGTGATGTACGACTCAAACACTAAGACGTGGAAGGAGACGGTGGAGCCGGGAGTGGTAACTGGGTTCGATGTCACCACAATGCCACATGCGCTGGTGCGACAGTCTGATGGCTCCTTTGAGTTCAAGACTCTGGATTGGTCCAAGCGTGGTGCTGGTAACGATGACACAAACCCTATGCCTAGCTTCGTGGATGCTGCGATTAATGACGTGTTCTTCTACAGGAACAGACTGGGGTTCTTGTCTGGTGAGAACGTAATCATGAGCCGTTCAGCCAGCTACTTTGCGTTCTTCCCTAAGAGTGTGGCGACACTGAGTGATGATGACCCTATTGATGTAGCTGTAAGTCACCATAGAATCTCAATCCTTAAGTATGCCGTTCCGTTTAGCGAGCAGCTACTACTTTGGTCGGATGAGGTTCAGTTCGTGATGACAAGCTCTGGGGTCCTTACCTCGAAGTCTATCCAGCTTGATGTAGGCTCAGAGTTTGCCCTAGGCGATAATGCCAGACCGTTCGCTGTAGGACGCTCAGTCTTCTTCTCAGCGCCCCGTGGGTCATTCACCAGCATTAAGAGATACTTCGCTGTAGCTGATGTGTCTGACGTGAAGGATGCTGATGATACAACTGGTCACGTACTGTCCTACATCCCTAACGGGGTGTTTGATATTCAAGGTACAGGGACCGAGAACTACATCTGCGTCAACTCTACAGGTGCATACAACCGAATCTACATCTACAAGTTCCTGTTTAAGGACGGAGTACAGCTTCAAGCCTCTTGGTCGCACTGGGAGTTCCCTAAAGCTGATAAGATTCTGGCGTCTGCGTCGATTGGCTCTACCATGTTCATCGTTCGCCAGCACCAAGGAGGGGTAGACATTGAGCACCTTAAGTTCATCAAGGAGGCAACTGACTTCCCGTCAGAGCCGTATAGACTCCACGTTGACTCCAAGGTGTCTATGGTCATCCCAGTTGACTCATATAATGCTGATACCTATAAGACTACGGTTGACATTGGTTCTGCTTATGGAGGAAACGCTCCGTCTCCCGGTCGGTACTATCTGATTGACAGTCAGGGTGCTTATGTGGACCTTGGGGACTTGACCAGTATCTCTACTGTGGTCATCCTCAACGGCGATTGGTCAGGACGTACAGTGTTCATCGGACGGGCTTATCTGATGTCCTACAAGTTCTCACGGTTCCTGATTAAGATTGAAGACAATAGTGGCACTCAGTCTGAAGACACTGGTCGTCTACAGCTTCGCCGCGCTTGGGTTAACTACAGAGACACTGGCGCTCTGAGACTCATTGTCAGAAACGGTGAGCGGGAGTTCGTGAACACCTTCAACGGGTACACCCTTGGTCAGCAAACCATCGGGACTACAAACATTGGTGACGGGCAGTATCGCTTCGCTATGAATGGTAACGCATTAACCACGAGTCTAACCTTAGAGTCCGACTATCCTACCCCAGTGTCCATCGTTGGGTGTGGTTGGGAGGCGTCATACGCTAAGAAAGCTCGTTCCGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d3d5d0333a59c09112645ab5ff03cc1f723b2911a2c59a3698b9ae1ea92910fc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3035
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and characterization of vB Seyj3-1 Wang,J. and Jing,Y. 2017-08-18 — GenBank