Protein

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Genbank accession
YP_009786904.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALISQSIKNLKGGISQQPDILRFAEQGSVQINGWSSESEGLQKRPPMIHLKTLGAAGYVGAQPYVHLINRDEFEQYFVVFTGEDIKVFDLDGKEYQVRGDRSYVRTANPREDLRMVTVADYTFVTNSKVVVQSNDQSVNLPGFKDQGDALINVRGGQYGRRLSIEFNGAERAAVQLPDGSQPAHVNEVDGQAIAEKLAAQLRNNLGNPNNDQDPNKWRFNVGPGFIHILAPNNDNVWGLQTKDGYADQLINPVTHYAQSFQKLPINAPDGYIVKIVGDTSKTADQYYVRFDLNRKVWVETIGWNTRTHLHYHTMPWALVRASDGNFDFKVLEWGARTVGDDTTNPYPSFIGQTINDIFFFRNRLGFLSGENIILSRTSKYFNFFPASVSNYSDDDPIDVAVSHNRVSTLKYAVPFSEELLLWSDQAQFVLTASGILSSRSVELNLTTQFDVQDRARPHGVGRNVYFASPRASFTSINRYYAVQDVSSVKNAEDMTAHVPNYIPNGVFSISGTTAENFAAILTSGAPNRVYIYKFLYIDEEIRQQSWSHWDFGDNVTVFAAQVINSTMTVLMSNEHAVWMGRLHFTKNSIDIPGEPYRLYIDAKRKYTIPAGTYNDDTYQTSISLAAIYGMNFTKGKVSVVFPDGKIIEVDPPINGWSSDPVLRLDGNQEGQVVYIGFNIPFTYTFSKFLIRKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFTIRVNNLSREFIYTMAGARLGSDNLRVGRSNIGTGQYRFPVVGNAQKNIVTIESDASTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:801 AA
molecular weight: 89720,28130 Da
isoelectric point:6,01723
aromaticity:0,11486
hydropathy:-0,34931

Domains

Domains [InterPro]
IPR058003
TTP
1–801
IPR058003
YP_009786904.1
1 801
Architecture
TTP
TTP 1-801
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009786904.1
1 801
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9937
Central domain 143 353 212 0,0714
C-terminal 354 801 447 0,1838
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-353
C-terminal
354-801

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage SM9-3Y
[NCBI] 		1897434 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teetrevirus
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009786904.1 [NCBI]
Genbank nucleotide accession
NC_047774 [NCBI]
CDS location
range 6736 -> 9141
strand +
CDS
ATGGCTCTCATTAGCCAATCAATCAAAAACCTCAAGGGTGGTATCAGCCAACAGCCAGATATTCTCCGGTTCGCTGAACAAGGTAGCGTGCAGATTAACGGTTGGTCTTCTGAGTCCGAGGGTCTCCAGAAGCGCCCACCGATGATTCACCTTAAGACCCTTGGCGCTGCTGGGTATGTGGGTGCGCAACCTTACGTGCATCTTATCAACCGTGATGAGTTCGAGCAGTATTTCGTTGTGTTCACTGGTGAAGACATTAAGGTATTCGACCTCGACGGTAAGGAGTATCAAGTCCGTGGAGACCGCTCATATGTTCGTACAGCCAACCCACGAGAAGACCTTCGGATGGTAACTGTGGCTGATTATACCTTTGTGACTAACAGCAAGGTGGTTGTGCAGAGTAACGACCAATCGGTCAACCTTCCGGGCTTTAAAGACCAAGGCGATGCGCTGATTAATGTTCGTGGTGGACAATATGGGCGTAGACTCTCAATCGAGTTCAACGGGGCTGAGCGTGCTGCTGTTCAACTACCAGACGGCTCACAACCAGCACACGTCAATGAGGTTGACGGTCAGGCCATCGCTGAGAAGCTGGCGGCTCAGTTGCGGAATAACCTAGGGAACCCCAACAATGACCAAGACCCAAATAAGTGGCGGTTCAATGTTGGCCCCGGATTCATCCACATCCTTGCGCCAAATAACGATAACGTTTGGGGACTACAAACTAAGGATGGTTACGCAGACCAGCTAATCAACCCTGTAACCCACTACGCTCAGTCGTTCCAGAAGTTGCCTATTAATGCTCCAGATGGGTACATTGTGAAGATTGTAGGTGACACCTCAAAGACTGCCGACCAGTATTACGTTAGGTTCGACCTCAACCGTAAGGTATGGGTAGAAACAATCGGCTGGAACACAAGGACTCACCTGCACTACCACACGATGCCTTGGGCGCTGGTACGTGCTTCTGACGGGAACTTTGACTTCAAGGTACTTGAGTGGGGTGCTCGTACTGTAGGTGATGATACAACCAACCCATACCCATCGTTTATAGGACAGACAATCAACGATATTTTCTTCTTCCGTAACCGTTTAGGCTTCCTTAGTGGGGAGAACATCATCTTGTCTCGCACCTCGAAATACTTCAACTTCTTCCCGGCCTCCGTGTCAAACTACTCCGACGATGACCCAATCGACGTTGCGGTTAGCCACAACCGGGTGTCAACCTTGAAGTATGCCGTTCCGTTCTCAGAAGAGTTGCTCCTATGGTCTGACCAAGCGCAGTTCGTTCTGACAGCCTCTGGTATCCTTTCGAGTCGCTCCGTAGAGTTGAACCTTACGACTCAGTTCGACGTGCAAGACAGGGCACGCCCACATGGTGTAGGACGTAATGTATACTTTGCATCACCTCGCGCTTCCTTCACATCCATTAACCGATACTATGCGGTACAGGATGTAAGCTCTGTGAAGAACGCAGAGGACATGACGGCTCACGTTCCGAACTACATACCGAATGGAGTATTCAGTATCTCAGGCACAACCGCTGAGAACTTCGCGGCTATCCTTACGAGCGGAGCACCGAACCGGGTGTATATCTACAAGTTCCTCTATATTGATGAAGAAATCAGGCAGCAGTCGTGGTCTCATTGGGACTTTGGGGACAACGTTACGGTGTTTGCAGCACAGGTGATAAACTCAACAATGACTGTATTGATGAGTAATGAACATGCTGTGTGGATGGGACGCTTGCACTTCACGAAGAACTCCATAGACATTCCGGGAGAGCCTTACAGATTATACATCGACGCTAAGAGGAAATACACCATCCCTGCCGGGACGTATAATGATGATACCTACCAGACGTCCATAAGCCTCGCAGCGATTTATGGGATGAACTTCACTAAGGGTAAAGTGTCTGTGGTCTTCCCTGATGGAAAGATTATAGAGGTAGACCCGCCAATCAACGGTTGGAGCAGTGACCCGGTGTTACGACTTGATGGGAACCAAGAGGGACAAGTGGTTTACATTGGGTTCAACATCCCGTTCACTTATACGTTCTCGAAGTTCCTCATCAGGAAGACCGCTGAGGACGGCTCGACGGCTACCGAGGATATTGGTCGCTTACAGCTTCGGCGTGCGTGGGTAAACTATGAGGACTCTGGAGCGTTCACCATCCGTGTGAACAACCTGTCCCGTGAGTTCATCTACACAATGGCTGGCGCTCGTTTGGGTTCCGACAATCTGCGTGTTGGTAGGTCGAACATTGGCACTGGGCAGTACCGCTTCCCGGTTGTTGGAAACGCTCAGAAGAACATAGTAACTATCGAGTCAGATGCGTCAACACCGCTGAACATCATTGGGTGCGGCTGGGAGGGGAACTACCTTCGTCGTTCTTCGGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
12e1705a011759b421d943b990d3962d36a92a8ec0e5302ba9056c2ee3fdc679
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9005
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Preliminary research on isolation and biological characteristics of a lytic bacteriophage against Serratia marcescens Sun,Y., Hao,Y., Shi,H., Li,J. and Huang,H. 2018-01-04 — GenBank