Protein

View in Explore
Genbank accession
WPH64306.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MNTIRLGNNPISFVYQGSKLIYPNPIKDGLVLWYDFNGMKNIDTNKGVTKDLTGRSTENTQHFNFLYNSESGYNKGLKFDGIDDRIIPMAKHPDGTVSQLDMKKINNGQKFSVEMTLKMSDKLIEKGSEIFMTSKTYGRFWLQFIKDNNIVSSEEYSISASTYYGAEGGRSTYSFSKSEGYKYGDEFHLVSTVDKNDKITLYVNGVKKDEKPLNDITITTSQETDFKVFLGQGDATAYYRRFEHELYSMKIYDRVLTEQEIQYNYNLEKERWNL
Physico‐chemical
properties
protein length:274 AA
molecular weight: 31697,17270 Da
isoelectric point:6,14659
aromaticity:0,13139
hydropathy:-0,71058

Domains

Domains [InterPro]
DC_0797
STR
1–274
DC_0797
IPR013320
STR
14–267
IPR013320
G3DSA:2.60.120.200
STR
22–266
G3DSA:2.60.120.200
PF13385
LEC
103–262
PF13385
WPH64306.1
1 274
Architecture
STR
STR 1-274
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPH64306.1
1 274
Domain Start End Length (AA) Confidence
N-terminal 1 25 25 0,9839
Central domain 26 224 200 0,3818
C-terminal 225 274 49 0,9615
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-25
Central
26-224
C-terminal
225-274

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_StaM_PB50
[NCBI] 		3093914 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPH64306.1 [NCBI]
Genbank nucleotide accession
OR770614 [NCBI]
CDS location
range 220325 -> 221149
strand +
CDS
ATGAATACAATTAGATTAGGCAATAATCCCATATCTTTTGTTTATCAAGGTAGTAAATTAATATACCCTAACCCAATTAAAGATGGATTAGTTTTATGGTATGATTTTAATGGTATGAAAAATATTGATACTAATAAAGGTGTTACCAAAGATCTAACTGGAAGATCTACTGAAAATACACAACATTTTAATTTCCTATATAACTCTGAAAGTGGTTATAATAAAGGATTAAAATTTGATGGTATTGATGATAGAATTATACCTATGGCAAAACACCCTGACGGAACGGTAAGTCAGTTAGATATGAAGAAAATTAACAATGGTCAAAAATTTTCAGTTGAAATGACACTAAAAATGTCAGATAAACTTATAGAAAAAGGATCTGAAATTTTTATGACCAGTAAAACATATGGTAGATTTTGGTTACAGTTTATAAAGGACAATAATATAGTTTCTTCTGAGGAATATAGTATTTCTGCTTCTACTTACTATGGAGCTGAAGGTGGTAGAAGTACCTATTCATTTAGTAAATCAGAAGGATATAAATATGGCGATGAATTTCATCTAGTATCTACAGTTGATAAAAACGACAAAATTACATTATATGTAAATGGGGTAAAAAAGGATGAGAAACCTTTAAATGATATTACAATTACAACTTCTCAAGAAACAGATTTTAAAGTATTTTTAGGTCAAGGAGATGCTACAGCTTATTATAGAAGATTTGAACATGAACTCTATTCAATGAAAATTTACGATAGAGTGCTTACTGAACAAGAAATTCAGTACAACTATAATTTAGAAAAAGAAAGGTGGAACTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ceddc1aad692dd0f8a541fe0f62ba7cddfa66852c6c6e11b33e6b10b82d4640
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7513
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Staphylococcus aureus phage vB_StaM_PB50 Li,J. 2012-12-15 — GenBank