Protein

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Genbank accession
AAP75894.1 [GenBank]
Protein name
tail protein Pb4
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MISNNAPAKMVLNSVLTGYTLAYIQHSIYSDYDVIGRSFWLKEGSNVTRRDFTGIDTFSVTINNLKPTTTYEVQGAFYDSIIDSELLNAQIGINLSDKQTFKMKSAPRITGARCESEPVDVGVGAPIVYIDTTGEADYCTIELKDNSNANNPWVKYYVGALMPTIMFGGVPIGSYKVRISGQISLPDGVTIDSSGYYEYPNVFEVRYNFVPPAAPINIVFKAARIADGKERYDLRVQWDWNRGAGANVREFVLSYIDSAEFVRTGWTKAQKINVGAAQSATIISFPWKVEHKFKVSSIAWGPDAQDVTDSAVQTFILNESTPLDNSFVNETGIEVNYAYIKGKIKDGSTWKQTFLIDAATGAINIGLLDAEGKAPISFDPVKKIVNVDGSVITKTINAANFVMTNLTGQDNPAIYTQGKTWGDTKSGIWMGMDNVTAKPKLDIGNATQYIRYDGNILRISSEVVIGTPNGDIDIQTGIQGKQTVFIYIIGTSLPAKPTSPAYPPSGWSKTPPNRTSNTQNIYCSTGTLDPVTNQLVSGTSWSDVVQWSGTEGVDGRPGATGQRGPGMYSLAIANLTAWNDSQANSFFTSNFGSGPVKYDVLTEYKSGAPGTAFTRQWNGSAWTSPAMVLHGDMIVNGTVTASKIVANNAFLSQIGVNIIYDRAAALSSNPEDPTK
Physico‐chemical
properties
protein length:675 AA
molecular weight: 73213,37190 Da
isoelectric point:5,32385
aromaticity:0,10222
hydropathy:-0,19911

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
104–196
IPR057551
AAP75894.1
1 675
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-667 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAP75894.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 411 411 0,8795
Central domain 412 646 236 0,1378
C-terminal 647 675 28 0,6030
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-411
Central
412-646
C-terminal
647-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAP75894.1 [NCBI]
Genbank nucleotide accession
AY303687 [NCBI]
CDS location
range 829 -> 2856
strand +
CDS
ATGATTTCAAATAATGCACCAGCTAAAATGGTTCTAAATAGCGTCTTAACTGGATATACGTTGGCGTATATCCAGCATTCTATCTACTCTGATTACGACGTTATAGGTAGATCATTTTGGCTTAAAGAAGGCAGCAACGTTACTCGTAGGGATTTCACGGGTATTGATACTTTCTCTGTAACTATTAATAACTTAAAACCTACAACAACTTATGAAGTTCAGGGTGCATTTTATGATTCCATAATAGACTCTGAACTTCTTAATGCACAGATAGGAATTAATCTATCTGATAAGCAAACTTTTAAAATGAAATCAGCACCTAGAATCACTGGTGCTCGATGCGAGTCAGAACCAGTAGATGTTGGTGTTGGAGCACCAATAGTTTATATAGATACTACAGGGGAGGCCGATTATTGCACTATAGAATTAAAAGATAATTCTAATGCCAATAATCCATGGGTTAAATATTACGTTGGTGCACTAATGCCTACTATTATGTTTGGTGGTGTGCCAATTGGATCCTATAAGGTAAGAATTTCTGGTCAAATAAGCCTACCAGACGGTGTTACTATTGATTCATCAGGATACTATGAATATCCTAATGTCTTTGAAGTTAGATATAACTTTGTACCTCCTGCGGCTCCTATTAATATTGTGTTTAAAGCTGCGCGCATAGCAGACGGTAAAGAGCGTTATGATTTACGTGTGCAGTGGGACTGGAATAGGGGTGCGGGTGCTAATGTTCGTGAGTTCGTTCTATCTTATATAGATTCGGCAGAGTTTGTAAGAACTGGATGGACTAAGGCACAAAAAATCAACGTGGGGGCTGCTCAGTCGGCAACAATTATATCATTCCCGTGGAAAGTAGAGCATAAATTTAAAGTGTCATCTATTGCCTGGGGACCAGATGCTCAAGATGTTACTGATTCCGCAGTACAGACATTTATATTAAATGAGAGTACACCATTAGACAATAGTTTTGTTAATGAAACTGGTATCGAAGTAAACTATGCGTACATTAAGGGTAAAATTAAAGATGGATCTACCTGGAAACAAACTTTCTTAATTGACGCTGCAACTGGTGCTATTAATATAGGTCTTCTAGACGCAGAAGGAAAAGCACCAATATCCTTTGACCCTGTTAAAAAGATAGTTAACGTTGATGGGAGTGTAATAACTAAAACTATTAATGCTGCTAACTTTGTCATGACTAATTTAACCGGTCAAGATAACCCAGCAATTTATACACAGGGTAAAACTTGGGGCGATACAAAATCCGGTATCTGGATGGGCATGGATAATGTTACTGCTAAACCAAAATTAGATATTGGTAATGCTACACAGTATATTCGTTATGATGGTAATATACTTAGGATCTCTAGTGAGGTTGTAATTGGTACCCCAAATGGTGATATTGATATACAGACGGGTATACAAGGGAAGCAAACAGTATTTATCTATATTATAGGTACTTCATTACCTGCTAAACCAACAAGTCCTGCATACCCACCTTCTGGTTGGTCTAAAACTCCACCAAATAGAACATCTAATACTCAGAATATTTACTGTTCTACAGGTACTCTGGACCCAGTTACTAATCAATTAGTATCGGGAACTAGTTGGTCTGACGTAGTTCAATGGAGTGGTACAGAAGGTGTTGATGGCAGGCCGGGGGCTACAGGACAACGTGGTCCTGGAATGTATTCTCTTGCTATTGCTAATTTAACAGCATGGAATGACTCACAAGCTAATTCATTTTTTACATCTAATTTCGGCAGTGGTCCTGTTAAATATGACGTATTAACTGAATATAAGAGTGGTGCTCCTGGGACAGCTTTTACTAGACAGTGGAATGGTTCGGCGTGGACTAGCCCTGCAATGGTTTTACACGGAGATATGATAGTTAATGGCACGGTAACTGCTAGTAAAATTGTTGCTAACAATGCTTTCTTATCACAAATTGGTGTAAATATTATATATGATCGTGCAGCAGCACTATCCTCTAACCCAGAGGATCCTACAAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cbe42fb95a0123f45aa839acd0616c8d315d172b8f3438e718521c010c04c70f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Nucleotide sequence of bacteriophage T5 DNA region including gene D17 Endrich,C. and Heller,K.J. 2021 — GenBank