Protein

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Genbank accession
YP_010089579.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,68
TF
Evidence RBPdetect2
Probability 0,88
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MNSDLIVKGNSRFSGVINADGNINVASGKFVIAGQAPTDNSHLTNKKYVDDKVASAISNAGDTYLPLAGGTVTGNLDVTGTRLKTWQLEVDSKSTLRGGLDVSSSLKVSSGNLVAADTTNAGGLFAKNGNVYCDAGSAGTNSNYWFRDSAGNTRGVIWSNGQNGDMIIRNQSGRELVFRNDGYLQLAHLAPGNTDNANTVNGIRLQRGDTVFDSFNAWQSGEYVRAGWHFYNASGVDQWLALTDTGVKIWGSAANLRVEGVGNFWDVEIRSDRRVKSNIAKIDNALDKVSKLSGNVYDLQLPNGDTKPSAGLIAQEVQEVLPEAVTTDNDKDALLRLNYNAVIALLVESVKELKAEIEELKSK
Physico‐chemical
properties
protein length:363 AA
molecular weight: 38935,70420 Da
isoelectric point:5,38086
aromaticity:0,07163
hydropathy:-0,33994

Domains

Domains [InterPro]
DC_0246
RBD
2–363
DC_0246
IPR030392
CHP
271–326
IPR030392 Coil
IPR030392
CHP
271–363
IPR030392
YP_010089579.1
1 363
Architecture
RBD
RBD 2-363
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010089579.1
1 363
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0267
Central domain 11 199 190 0,3355
C-terminal 200 363 163 0,9142
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-199
C-terminal
200-363

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KPV15
[NCBI] 		1913572 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Jiaodavirus
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010089579.1 [NCBI]
Genbank nucleotide accession
NC_055715 [NCBI]
CDS location
range 165433 -> 166524
strand +
CDS
TTGAACTCAGACTTGATAGTTAAAGGCAATTCCCGCTTCAGCGGTGTGATTAATGCTGATGGAAACATCAACGTCGCTTCTGGTAAGTTTGTTATTGCAGGTCAAGCTCCTACTGATAACTCGCACCTGACCAACAAGAAATATGTTGATGACAAGGTTGCTTCTGCTATTAGTAATGCTGGTGATACTTATCTTCCGTTAGCGGGTGGTACTGTAACCGGTAACCTTGACGTAACTGGCACCAGATTAAAAACCTGGCAGTTAGAAGTTGATAGCAAAAGTACTCTAAGAGGCGGGTTAGATGTTAGTAGCAGTCTTAAAGTTTCTAGCGGAAACTTGGTCGCCGCTGACACAACCAACGCTGGTGGTCTTTTTGCTAAAAATGGTAATGTTTACTGTGATGCAGGTTCAGCTGGTACAAACTCTAACTACTGGTTCCGCGATTCAGCTGGTAACACCAGAGGCGTTATCTGGTCTAACGGTCAAAATGGTGACATGATTATCCGTAACCAAAGTGGTCGAGAGCTTGTATTCAGAAATGATGGATATCTGCAATTAGCCCACTTAGCACCAGGAAACACAGATAATGCAAACACTGTAAATGGAATACGTTTACAGCGCGGTGATACGGTTTTCGATAGCTTTAACGCATGGCAGTCGGGTGAATATGTTCGCGCTGGATGGCATTTCTATAACGCCTCTGGAGTTGACCAGTGGTTAGCACTTACAGATACTGGGGTAAAAATCTGGGGTAGTGCTGCTAATCTACGCGTTGAAGGTGTTGGTAATTTCTGGGACGTTGAAATTCGTTCTGACCGTCGTGTGAAATCAAATATTGCTAAGATTGATAACGCTCTTGATAAAGTGTCGAAGCTATCTGGTAATGTTTATGATTTACAGCTTCCAAACGGTGATACTAAACCATCGGCAGGTCTTATCGCGCAAGAAGTGCAGGAAGTTCTTCCTGAAGCAGTTACAACTGATAACGATAAAGATGCATTACTTCGTTTAAACTATAATGCAGTAATTGCGTTATTAGTCGAATCTGTTAAAGAGCTTAAAGCAGAAATTGAAGAACTTAAATCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
677e41ecf9cc172040a9a1f2ebf4c78970165d453f12ceeb0063f27a07a73155
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7269
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for prophylaxis and treatment of hospital infections (variants), strains of bacteriophages, used for obtaining thereof Aleshkin,A.V., Volozhantsev,N.V., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Popova,A.V. and Svetoch,E.A. 2016-10 — GenBank