Protein

View in Explore
Genbank accession
YP_009787439.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,88
Protein sequence
MDQDIKTVIQYPVGATEFDIPFDYLSRKFVRVSLVAGDNRRLLSNITEYRYVSKTRVKLLVETTGFDRVEIRRFTSASERVVDFSDGSVLRAADLNVSQIQSAHIAEEARDGQYYSLNLNDLGQFDAKGTKIINLGAPTSPQDATTKLYVDTKDQVLSQRILDEIKARADGDIEMLRQAKMYSDSHIPGILPEGATSVGYWLPSATALMNDDSGHPVVRVRGFYTADDGGEGSWVWTNEVDAQKAGTHDILTASVYDKVGRRYRIDITIGAVNAAQNGARRLTYAQATDRTTDDFVCLGQVISGITSLMPLPVSTNNSESGYIGDYRINLTISPGRYRIGKESGGIDSGMVINAWGARVHVVAGKSYTRAITGKWIHGLVHGYDQIKRKWEAVGKQAFWGSVSLKDVVINGGFWIGDHDLRTPASECSAGVGTLLLNPEGVILNGVHQRNFNWVHVAMGAMIGETWYRTSKGRHFDDNELDYPYVMDFMTSNVPPVTRRFGNFNRVAYHGCKFESGRRGVFRNGVDWSGCYNTEIINNIAWRNPANADGSLPEFIAVLTGTAFHMSAGYMGPAAAKDFNAGVASVYSSTQNIKFDATYTEWTYAFMMISSWGFVDSASRLQGLSLDLVSVYKDNFADYGQIIFEEGCFPTMSEDGSATYPAGFKHFDTPQGQSPYVIGKPVRDVGAFRNQGFDFKYATNNVYLTTGTDWESWRDRPYAREMFNAFGLQINSGTAFLPLQNPADKSMTCIWYKDFTGNFDTRKVIQFITAAAQEGPNADEALYKSYAERVVDFGNGYKMMMIPNKRLTAWDGIYTYARNASITVEVSADTPIALIAVEAYTGGVPLFPNGVPNYVPESSCASVVPTAPQVGFDSNLGGGLFFNGDVVGPWVHVRRNKVGRRITPQVTAGSVLSTRRVSGQGVTLESALKTTFTATIISSNADTTTISIPTASLPSVAVGIPLYVQSGSSTGFTGLAHLHLRVMLANGKADNKYVVNGKLGEAGDNLTIDQSQIAAYTLLADFTQTTITAETMTLSGVARASAFRASVGVDVGYGGSSEPKVVAFYFNGGTTSTHAITATSLNGMSVNANGNLSINGHTFSTQDGTHTLGTAQNRWAAVWSANGTLQTSDERFKILDGDIPEELLDAWEKYVKVKVYRMKSAVSLKGPDARKHVGYIAQHVIEALTQAGLDWTKYGVVGFDEWDANEFGPAGDRYSLRYDQCAAIENAVLDRRIRRLEELLLNK
Physico‐chemical
properties
protein length:1242 AA
molecular weight: 135937,91370 Da
isoelectric point:6,04860
aromaticity:0,10467
hydropathy:-0,22802

Domains

Domains [InterPro]
DC_0778
STR
1–826
DC_0778 cd02795
IPR005604
ATT
3–127
IPR005604 IPR044914 IPR036388
cd10144
CHP
1127–1231
cd10144
IPR030392
CHP
1127–1242
IPR030392
IPR030392
CHP
1127–1188
IPR030392
YP_009787439.1
1 1242
Architecture
ATT
STR
RBD
ATT 1-127 | STR 128-826 | RBD 1061-1242
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009787439.1
1 1242
Domain Start End Length (AA) Confidence
N-terminal 1 294 294 0,9932
Central domain 295 1016 723 0,9821
C-terminal 1017 1242 225 0,9014
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-294
Central
295-1016
C-terminal
1017-1242

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnP_PRA33
[NCBI] 		1907781 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009787439.1 [NCBI]
Genbank nucleotide accession
NC_047780.1 [NCBI]
CDS location
range 33404 -> 37132
strand +
CDS
ATGGACCAAGACATTAAAACAGTCATTCAGTACCCAGTGGGGGCCACTGAGTTCGACATCCCGTTCGACTACCTTTCCCGCAAGTTCGTCAGAGTGTCACTAGTAGCTGGCGACAACCGCAGACTGCTGAGTAATATCACTGAGTACCGCTACGTGTCTAAGACCAGAGTGAAACTCCTTGTGGAAACTACCGGGTTCGACCGTGTGGAAATTCGCAGATTCACCTCAGCTTCAGAGCGTGTAGTAGACTTCAGTGATGGCTCGGTTCTCCGTGCAGCCGACCTTAACGTATCTCAAATACAGTCGGCACATATCGCAGAGGAAGCACGTGACGGTCAGTATTACAGCCTCAATCTTAACGACCTCGGACAGTTTGACGCTAAGGGTACTAAGATTATTAACCTAGGTGCGCCAACGTCCCCACAAGATGCCACAACGAAACTGTATGTGGACACTAAGGACCAAGTCCTTAGCCAGAGAATCCTCGATGAAATCAAAGCGAGAGCCGATGGGGACATCGAGATGCTCCGTCAGGCAAAAATGTATTCCGACTCCCATATTCCTGGAATTTTGCCGGAGGGGGCCACGTCTGTCGGTTACTGGTTACCATCTGCAACAGCACTGATGAATGATGACTCTGGACACCCTGTGGTTAGGGTCCGTGGGTTCTACACTGCCGATGATGGTGGCGAGGGTAGTTGGGTGTGGACCAACGAGGTAGATGCTCAAAAGGCTGGGACACACGACATTTTAACGGCCTCGGTGTATGATAAGGTAGGTCGCCGCTACCGTATCGATATCACCATTGGGGCTGTAAACGCGGCACAGAACGGTGCCCGCAGATTAACCTACGCACAAGCTACCGACAGGACCACAGACGACTTCGTGTGCCTAGGTCAGGTAATCTCTGGTATCACCTCACTGATGCCCCTCCCAGTATCAACTAACAACAGTGAGAGTGGATACATTGGCGATTATCGAATCAACCTAACGATATCTCCGGGCCGCTACCGTATCGGTAAAGAGTCTGGTGGAATTGACTCGGGCATGGTAATCAACGCGTGGGGAGCACGAGTGCACGTTGTTGCTGGTAAGTCTTACACCAGAGCAATTACTGGTAAGTGGATTCACGGTCTGGTGCACGGATACGACCAGATTAAACGTAAGTGGGAGGCTGTTGGTAAACAAGCGTTCTGGGGCAGTGTTTCCCTGAAGGATGTGGTAATCAACGGCGGCTTCTGGATTGGTGACCACGACCTGCGGACTCCGGCTTCCGAGTGCTCTGCTGGCGTTGGTACGCTCCTACTGAACCCTGAAGGCGTAATCCTGAACGGTGTGCACCAGCGCAACTTCAACTGGGTCCATGTCGCTATGGGAGCAATGATTGGGGAGACTTGGTACCGCACTTCGAAAGGTCGTCACTTTGATGATAACGAACTTGACTACCCTTACGTTATGGACTTTATGACCTCTAACGTTCCGCCAGTTACTCGCCGCTTCGGTAACTTCAACCGCGTGGCGTATCACGGGTGTAAATTCGAAAGTGGACGTCGTGGCGTGTTCCGCAATGGCGTTGACTGGTCTGGGTGCTACAACACCGAAATCATCAACAACATCGCATGGAGAAACCCGGCTAACGCGGACGGAAGTCTTCCAGAGTTCATCGCCGTACTTACGGGTACTGCGTTCCACATGAGCGCTGGTTACATGGGTCCTGCGGCAGCTAAGGACTTCAACGCAGGAGTTGCCTCTGTCTACAGTTCTACCCAGAACATTAAGTTCGACGCTACGTACACCGAGTGGACTTATGCTTTCATGATGATTTCCTCATGGGGCTTTGTGGATTCAGCAAGTCGCCTTCAAGGCCTCTCTCTGGACCTTGTGTCTGTGTACAAGGATAACTTTGCGGATTACGGTCAGATTATCTTTGAGGAGGGGTGTTTCCCGACTATGTCCGAAGATGGCTCAGCTACTTACCCTGCTGGCTTTAAACACTTCGACACGCCTCAAGGGCAGTCTCCGTATGTTATTGGCAAGCCTGTACGAGATGTTGGTGCGTTTCGTAACCAAGGGTTCGACTTTAAGTACGCAACCAACAACGTGTACCTGACAACTGGAACCGATTGGGAATCGTGGCGAGACCGTCCGTATGCCCGCGAGATGTTCAATGCGTTTGGCTTACAGATTAACTCTGGTACTGCCTTCCTACCGTTGCAGAACCCAGCAGATAAGTCTATGACCTGCATCTGGTATAAGGACTTCACTGGGAACTTCGATACCAGAAAGGTTATCCAGTTCATCACTGCTGCCGCACAAGAGGGGCCTAATGCCGACGAGGCTCTTTACAAGTCATACGCAGAGCGTGTTGTTGACTTTGGTAATGGCTACAAGATGATGATGATTCCAAACAAGAGACTGACGGCATGGGATGGTATCTACACCTACGCACGCAACGCAAGCATCACGGTGGAGGTGTCAGCAGATACTCCTATCGCACTGATTGCTGTCGAAGCGTACACTGGTGGTGTACCACTGTTCCCTAACGGTGTCCCTAACTACGTTCCGGAATCTTCATGTGCCAGCGTGGTACCAACAGCGCCTCAGGTTGGGTTCGACTCTAACCTTGGCGGCGGTCTCTTCTTTAACGGTGACGTTGTAGGCCCTTGGGTTCACGTTCGTCGTAACAAGGTTGGCCGCAGGATTACCCCTCAGGTTACTGCTGGTTCCGTATTGTCCACACGTAGAGTGAGTGGTCAGGGTGTCACCTTAGAGTCTGCCCTGAAGACAACGTTCACAGCGACGATTATTAGCTCTAATGCTGATACTACGACAATCTCCATCCCAACTGCGTCCCTCCCATCGGTGGCAGTAGGCATCCCGCTGTATGTGCAGTCAGGTTCATCCACTGGATTCACTGGGCTTGCCCACCTGCACCTCAGGGTGATGCTGGCTAACGGTAAGGCGGACAACAAGTACGTTGTTAACGGTAAGCTTGGGGAGGCTGGTGATAACCTCACTATTGACCAGTCTCAGATTGCCGCTTATACGCTTCTTGCTGACTTTACACAGACTACCATCACAGCCGAGACCATGACTCTCTCCGGTGTTGCGCGTGCGTCTGCGTTCAGGGCCTCTGTAGGTGTGGACGTTGGGTATGGTGGTAGCTCTGAGCCTAAGGTTGTGGCTTTTTACTTTAACGGCGGAACCACTTCAACTCACGCCATCACAGCAACTTCCCTTAACGGAATGAGTGTTAACGCCAACGGTAACCTCTCAATCAACGGTCACACGTTCTCTACGCAGGACGGTACGCACACACTGGGTACTGCGCAGAACAGGTGGGCGGCTGTATGGTCCGCTAACGGAACGCTCCAGACGTCCGATGAGCGCTTTAAGATTCTCGATGGGGATATCCCCGAAGAGCTTCTTGATGCCTGGGAGAAGTACGTGAAGGTTAAAGTGTACCGTATGAAATCTGCGGTCTCCCTGAAGGGTCCTGATGCTCGTAAGCACGTTGGGTATATTGCCCAGCATGTGATTGAGGCATTGACTCAGGCAGGACTCGATTGGACGAAATACGGTGTGGTTGGTTTCGATGAGTGGGATGCTAACGAGTTTGGTCCGGCAGGTGACCGCTACAGCCTTCGCTATGACCAGTGTGCTGCCATTGAGAACGCTGTGCTGGACCGCAGGATTCGCCGTCTTGAGGAGCTTCTGCTAAACAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
91c731b1c74209a9aa1a4f6743ffe59b47c0e6ea84f29df4296b071a98db9c0b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5196
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequencing and assembly of Klebsiella pneumoniae phages Labudda,L., Strapagiel,D., Karczewska-Golec,J. and Golec,P. 2017-11-09 — GenBank