Protein

View in Explore
Genbank accession
YP_004324270.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MAKQQIGVGSASNDGTGDTLRQGAVKVNANFSEIYSVFGDATNLVSFAKTSGISSDSNKFGGQIPSFYQDATNLTSGLLSPDRLPEVVVATAFSGGLIGSVTGNVTGDLTGTASTSVNAAVAYAVTGQPDLLARDIVAVSIACTNVIGDLTGAAAYAQTSGLSNYSFVSGLSTNSQRSVYSQLSGVSTVSGYATTAGIATLAVNSQGLTGSPDIVVGLASGTFKGDGSQLTGVVAASSGILIRDNDTPIGIAASVNFGYGATVSPLSAGIVTVTAVTQYDQLEISGVSTFTGDIKPNGNITGDGNTVITGVSSAYITDLHGGLIGNVITAAQPNITSLGTLTSLNVSGDVSIGGTLTYEDVTNIDSVGLITARSGMVATGVVTATAFSGPLIGNADTATSSGTATTATRANNIAVVDESTDTTCSVLYTNAASGYQAAKTGTNLLFDAVQGTLKPTNINATGIITASSFSGNATSATQATTANVASAVLLSDESSDTTCYPTFANSGIGTQSLKTGSNLYFNSNSGQLYATQFSGSGAGLSNIPASAITGLNVDTRPNFQTAEYSTKTTFDFTHNYTSVPNMSCTITPTNSNSKILIQVLIMGWASGGKYDTVWGIQRSISGGSTNDLTYPNDGLRQGSMYYETDTTQNYQAHCFQYWYVDTPGTTAAITYTPRIRNGYTAGTRTFYFNRDFGYFNYQSYRVGGSRMSVMEVQP
Physico‐chemical
properties
protein length:714 AA
molecular weight: 73132,59900 Da
isoelectric point:4,51946
aromaticity:0,08123
hydropathy:0,02199

Domains

Domains [InterPro]
IPR036240
STR
1–42
IPR036240 DC_1345 DC_1875
DC_0533
ATT
1–57
DC_0533 DC_0759
IPR008987
ATT
3–43
IPR008987
G3DSA:1.20.5.960
Unmapped
13–44
G3DSA:1.20.5.960
YP_004324270.1
1 714
Architecture
ATT
STR
STR
ATT 1-57 | STR 80-453 | STR 459-663 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324270.1 [NCBI]
Genbank nucleotide accession
NC_015287.1 [NCBI]
CDS location
range 175613 -> 177757
strand +
CDS
ATGGCTAAGCAACAAATTGGTGTGGGTTCTGCCAGTAATGATGGAACAGGAGACACCCTGCGACAAGGAGCAGTAAAGGTAAACGCAAACTTTAGCGAGATATACTCGGTATTTGGTGATGCGACTAATTTGGTAAGCTTTGCCAAGACTTCTGGTATCTCCAGTGACTCTAATAAGTTTGGTGGTCAGATACCTTCTTTCTATCAGGATGCAACTAATTTAACCTCTGGTTTACTTTCACCCGATCGTTTACCAGAGGTTGTTGTAGCGACTGCTTTTAGTGGTGGGTTGATAGGAAGTGTAACTGGTAACGTTACAGGTGATCTCACTGGTACTGCATCTACATCTGTCAATGCTGCGGTTGCATATGCCGTAACTGGACAACCAGATCTCTTAGCAAGGGATATAGTTGCAGTCAGTATTGCTTGTACTAACGTTATAGGTGATCTTACTGGGGCTGCAGCGTATGCTCAGACCTCTGGACTTTCAAACTATTCTTTTGTATCTGGTCTTTCTACAAACTCTCAGAGATCAGTATATTCTCAACTCTCTGGTGTATCTACTGTATCTGGTTATGCAACTACTGCTGGTATCGCCACTCTTGCAGTCAACTCTCAAGGTCTAACTGGATCACCTGATATTGTTGTTGGTCTTGCTAGTGGAACGTTTAAGGGTGATGGATCTCAACTGACTGGAGTTGTTGCTGCATCTTCTGGTATCCTTATTAGGGATAACGATACTCCTATTGGTATTGCTGCTAGTGTTAATTTTGGATATGGTGCAACAGTATCACCTTTATCTGCTGGTATTGTTACCGTAACTGCTGTCACCCAATACGATCAATTAGAAATTTCTGGTGTCTCAACCTTTACTGGAGACATCAAACCAAATGGAAACATTACAGGTGATGGCAACACAGTTATAACTGGTGTATCATCGGCTTACATCACTGATCTTCATGGTGGATTGATTGGAAATGTAATCACCGCAGCACAACCAAACATCACATCACTAGGTACTCTAACTTCATTGAATGTTAGTGGTGACGTAAGTATTGGTGGAACATTAACATACGAAGATGTAACTAATATTGATTCTGTTGGTTTGATCACCGCAAGATCTGGTATGGTTGCAACTGGTGTCGTAACTGCGACAGCATTTAGTGGACCTTTGATCGGAAATGCAGACACTGCCACTAGTTCTGGAACTGCAACTACGGCGACCAGAGCAAATAACATTGCAGTTGTCGATGAATCTACAGATACAACATGTAGTGTGTTGTATACTAATGCTGCCTCAGGTTATCAGGCTGCCAAAACAGGAACTAACTTACTGTTTGATGCAGTACAGGGAACTCTAAAACCAACTAATATTAACGCAACTGGTATTATAACTGCTAGTTCATTTAGTGGTAATGCTACGAGTGCCACTCAAGCTACCACTGCAAATGTAGCATCTGCTGTTCTCTTAAGTGATGAATCCTCAGACACTACTTGTTATCCTACATTTGCTAACTCAGGAATAGGTACACAGTCATTGAAGACTGGATCTAATTTATATTTCAACTCTAATTCGGGTCAGTTATACGCTACACAATTCAGTGGTTCTGGAGCGGGTCTTTCTAATATACCAGCATCTGCTATTACTGGTCTTAATGTTGATACTAGACCAAACTTCCAGACAGCAGAATATAGCACAAAAACTACTTTTGATTTTACTCATAATTATACATCAGTGCCTAATATGTCTTGCACTATTACTCCTACTAATTCAAATAGTAAGATTCTCATACAGGTTCTGATAATGGGTTGGGCATCAGGCGGTAAATATGATACTGTGTGGGGAATCCAAAGATCAATATCTGGTGGGTCTACAAACGATTTAACCTATCCAAATGACGGTCTCAGGCAAGGAAGTATGTATTATGAAACTGACACCACTCAAAACTATCAGGCACATTGTTTCCAGTACTGGTATGTGGATACTCCTGGCACGACAGCTGCAATAACATATACTCCAAGAATTAGAAATGGATATACTGCTGGAACCAGAACCTTCTATTTTAACAGGGATTTTGGATATTTTAATTATCAAAGTTATAGAGTAGGTGGTAGTAGAATGTCAGTAATGGAGGTACAACCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2f18709f017bce6671d6ffd07291fa14456b9f0ebc9b77b84215fbf1c58431e7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank