Protein

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Genbank accession
QFR59293.1 [GenBank]
Protein name
putative pectin lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MFFTQNPIGSSATEDLQDNAISFDYAMNSPAALWQDRFGKQHKTVQQALKDVGFKPAGFDFVNGGTLGIGDRDKCVFYPTDGYWYSWNGKLPYVVPANSSPTPGGKKGWGIVTRDERVIAREALRRTYQEAGYDLVEGSFEQGGVLVNSNDVLLQERTGKVFSGPAGVVAAGTDPASGGFVDRSGELLRSRLIFNVLDFGAAGDGTTNDSPAFVSAILYVALAGGGRIIAPYRSYKLTETVIVPSCVELDFCNSEIIGPGLGSSVDVFQSGYLSGGAVISNIGAPPETILVRQAAVKNASIRDCGKVFNLYNFLFNSELSNIYFTNCTQPVYAARCFYGRFVNLFSRGSGGGTTLPAFYFRDFVNVCAIESVFVSGRVTGIEISSGANGQTLYCCSAEGCTNGIIISGETGPIKLDTCYLEGDSGIGVDLSAGGFKYDVTFDNCFFNKCGTAINRGTNGSRIHVYENNRFLACPNVISGLDNYNDLGEVEIAPVPIANNGYPSIPAGYALGGKSRVRHENILFDSATGFGMIKTQVHGNTLVPFNYEGKAGGPKAGTVAFCEHSKTAGTTFSIIIDTKIAFNKHAALLAYRITIADELSAYELFGNIYGDKAKSHDGFDKTVAVSNNGGFIRLTFDSFYSSVQTYSCTGVVRHV
Physico‐chemical
properties
protein length:654 AA
molecular weight: 70001,76510 Da
isoelectric point:5,62964
aromaticity:0,11621
hydropathy:-0,03364

Domains

Domains [InterPro]
DC_1559
ATT
1–137
DC_1559 IPR011050
G3DSA:2.10.10.80
ATT
56–117
G3DSA:2.10.10.80 IPR012334
IPR011050
STR
195–528
IPR011050
DC_1133
RBD
499–654
DC_1133
QFR59293.1
1 654
Architecture
ATT
STR
RBD
ATT 1-137 | STR 192-548 | RBD 549-654
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFR59293.1
1 654
Domain Start End Length (AA) Confidence
N-terminal 1 208 208 0,9928
Central domain 209 527 320 0,9831
C-terminal 528 654 126 0,9793
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-208
Central
209-527
C-terminal
528-654

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage PS2
[NCBI] 		2653650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila subsp. hydrophila
[NCBI] 		196023 Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas > Aeromonas hydrophila subsp. hydrophila

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFR59293.1 [NCBI]
Genbank nucleotide accession
MN453779 [NCBI]
CDS location
range 152768 -> 154732
strand -
CDS
ATGTTTTTCACACAAAACCCTATTGGGTCTTCAGCAACTGAAGACTTACAAGATAACGCTATTTCGTTTGATTATGCGATGAATTCCCCAGCTGCATTGTGGCAGGATCGTTTCGGTAAACAACACAAAACTGTACAACAGGCTTTGAAAGATGTTGGGTTCAAACCAGCAGGATTTGACTTTGTTAATGGTGGCACTTTAGGCATCGGTGATCGTGATAAATGTGTTTTTTATCCAACAGATGGATATTGGTACAGTTGGAATGGTAAATTACCTTATGTAGTTCCAGCTAATAGTTCTCCTACCCCAGGTGGTAAGAAAGGATGGGGTATTGTTACTAGGGATGAACGTGTAATAGCAAGAGAAGCACTTCGTAGAACTTATCAAGAAGCAGGATATGATCTTGTTGAAGGGAGTTTTGAACAAGGTGGTGTTCTTGTAAATAGTAATGATGTGTTGCTGCAAGAGCGCACTGGTAAGGTATTCTCCGGGCCTGCTGGTGTAGTTGCCGCTGGTACTGACCCAGCGAGCGGTGGGTTTGTTGATCGCAGCGGTGAGCTACTGCGCTCCAGGCTTATATTTAACGTCCTCGACTTTGGCGCAGCGGGGGATGGCACAACTAATGACTCACCCGCATTCGTCTCCGCGATACTGTATGTCGCGCTTGCTGGCGGTGGGCGCATAATCGCACCATATAGATCTTACAAGTTGACGGAAACGGTGATCGTACCATCTTGCGTAGAGCTAGACTTCTGCAACTCTGAAATTATTGGCCCGGGTCTGGGGAGTTCTGTAGACGTTTTCCAGAGCGGGTATTTATCCGGCGGCGCTGTCATAAGCAACATCGGTGCCCCACCAGAAACAATTCTGGTTCGGCAGGCTGCTGTAAAAAATGCCAGTATTAGAGATTGTGGTAAGGTATTTAATCTATACAACTTTCTGTTCAACAGTGAGCTTAGTAACATCTACTTCACCAACTGTACTCAACCTGTTTATGCTGCTCGCTGTTTCTACGGGCGTTTCGTTAACCTGTTCTCTCGCGGTAGTGGAGGGGGAACCACGTTGCCGGCTTTTTACTTCCGTGATTTTGTCAACGTCTGCGCGATTGAATCGGTGTTTGTAAGTGGGCGTGTCACTGGGATTGAAATATCGAGCGGGGCTAACGGCCAGACTCTGTATTGCTGCTCGGCTGAGGGGTGCACAAACGGGATTATCATTTCCGGCGAGACTGGCCCTATCAAGCTCGATACGTGTTACCTAGAGGGGGATTCTGGGATCGGTGTGGACCTGTCCGCTGGCGGTTTCAAATATGATGTGACCTTTGATAACTGCTTCTTCAACAAATGCGGAACAGCTATAAACAGAGGAACGAATGGCTCCCGAATTCATGTTTATGAAAATAACCGATTCCTTGCTTGTCCAAATGTAATCTCAGGGCTGGATAACTACAACGATTTAGGTGAGGTCGAGATAGCCCCTGTCCCCATCGCCAATAACGGCTACCCATCAATCCCGGCTGGTTACGCGCTTGGCGGGAAATCCAGAGTTCGGCATGAAAACATTCTTTTCGATTCGGCCACTGGGTTTGGGATGATTAAGACTCAGGTGCATGGTAACACTCTAGTGCCGTTCAATTACGAGGGTAAGGCAGGGGGGCCTAAAGCAGGGACGGTGGCGTTCTGTGAGCACTCAAAAACAGCCGGCACCACTTTCTCTATAATCATAGACACAAAGATAGCATTCAATAAGCACGCAGCTCTGTTAGCGTACCGCATAACGATAGCAGATGAGTTAAGCGCTTATGAACTGTTTGGTAACATTTATGGCGACAAAGCCAAGTCACATGATGGGTTTGATAAAACCGTTGCTGTGTCCAATAATGGCGGGTTTATTCGCCTGACGTTTGACAGTTTCTACAGCTCGGTGCAGACATATAGCTGTACGGGCGTGGTGCGACATGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0bb6d0b95c5e37ec15db27b3fec525d9b3d12eacc9c297abc0c6ea1dce29b921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7315
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage PS2 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-04-30 — GenBank