Protein

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Genbank accession
YP_009113178.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MALVIHYTRNEDGTFDVKHYRDNPINFAVTHVPDGVPFRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVVVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVAAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDSTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSTPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLAHDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGSDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93654,45970 Da
isoelectric point:5,21551
aromaticity:0,09742
hydropathy:-0,35634

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
YP_009113178.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-847 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009113178.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 229 229 0,9765
Central domain 230 428 200 0,6309
C-terminal 429 852 423 0,1706
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-229
Central
230-428
C-terminal
429-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage LSPA1
[NCBI] 		1540823 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus LSPA1
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009113178.1 [NCBI]
Genbank nucleotide accession
NC_026017 [NCBI]
CDS location
range 21072 -> 23630
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGTAACGAAGACGGCACGTTTGATGTCAAGCACTACCGCGATAACCCAATTAACTTCGCCGTTACCCACGTCCCTGATGGAGTTCCGTTTCGCGTTTTCATCGACGAAATCGGAGAGGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGAGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTACTATCACCATCCGTGAAAGGGGCGTCCTCTAACCTGGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCGCGCCCGTACGAGCGCAGTTATGACATCTGCGGGACAGTGCAAACCATCCCTAATAACCTTATGACTACTTATAAGGTGTTTAACGCCGCCGGTAAAATTGTAGAGTACGGTTATTACGACGCCGGGCGTGGCTACCTCGACATACACCCGGAAGGTATAACGGACGGGGATACCCGTGTATCGGATATAACAGGTACGTCGGTCGCTGTGTACGCACCATATACATCACCCAATAACACATCGACACCCCAGGTCGTGGTCGGAGACCCCATAGAGCAGGGCCTGTATATCACCGTAGAATCTAACGAAGTAGACGGCGTGGTTCTGAAAGCACCCAACGGCCTGGGCATTTCTTTCTCTTACATGTCCGGATACCCGTCCTTATCCGGTAACATCGGCACCATATATGACCCAACAGGTGGCTCGGATTTTTCTGGGGTACTGGTGCCTAATGATACATTTTCGCTGGTGGCCGCGTGGACAAATACAGACGTTGACCTCTCCGGCGGCGGATATCAGGTAGTCAGCGTGTCCGAAGGGACCGTTACCTTTATAGTGCCCGGTGGCCTCATTGGTAGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGTGGTGATGGAGAGGCCTCGCTGCAACCAGACAGCACGTATGAGAAAACATTAACCGATTGGGTTTCAATAAACCGTACCGAGGTCGAGCGTATAGTCGCCAATATCGCCGCCGCGAACGGCATGTATAAAGACAACGGCAAATCGAAAACACTGGCGTCAGTCACCGCCGAAATACAGTATCAACTGCTCGATGAAAACAGCACTCCTTACGGACCGATATATACTGCGCAAGGAACCGTGTCCGGACGCACCCCAGACTATAACGGCGTCACTATTTACGCTGACCTGCCGGTTGTGTCGCGGGTGAGGGTTCGCGCCAGGAGGGTTACGGACCTGGACTTTAATTTCGAGGGGTCTGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCACGTGCTGCGGAAGTAAAGCAACCACAGTTGCGCATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAATGGTGTTTTCGAAGACACGATGACTCCCAATACACAAGCCGTGCAATCTCTTATCCGCCTGGCGCATGACCCGGATGTTGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTTGGCGACAAACAGGCCGGAGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATCGTTAGTACTATAGCTGACGCTATCTTCTGTACTCCATACAGGCGTGGGGCGGACATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCTGAGATGGTGTTCACCCACCGAAGTAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCGCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACTGGCGGGCTTAAAACGGAGACTTATGACTCTAAGGGTATTCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTCGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGCTCCAGGATGGCTACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCGGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGCGACGGCGGAGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACCGGCAGGTAATCATGACGTCGGTACCGCAAGAAGCCATTTACACTGGTAATAGCGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTAGACCCAGGGGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAACGGATCTGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9437c2382a9e6333b972a4826b23b39a5f76dfb0625d2eb6972710c2d658e1a8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3022
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50