Protein

View in Explore
Genbank accession
QJT70755.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MTDRNNFFELTEKFKQNIDWLNLVLLGGENDSAFINGVEKPSIDKRFNDRFSELKAMVKGRRAFETLSDLLASGLPPEDTLLAEVWKDPSKINNGLYGWTGSEWEKSPYDDVNELTKHVDSLIEMAESSDVLQAFVDSAGRMYAAFNRLGELEALLSNSAKEAANYLNFVQDEKIAFGITDINDRLVFGVTHSGEVIPSPNLANVKGYAFLVVDPDDKIILGVTDKGELKSFGSEDSAPVIPEVDKNSIAFSLEVGTFPLLPGKIISGYHRALIEPKLSLPCQAVGRSTDPVLNLTDNGFCHPKVVYKPGGWNGFQYWMLMTPYFGVVGTHSQYENPTILCSNDGVKWKEPDGLVNPIDVPNDEDSSYWSDTHLVLGDDGFLYAFYRGNHFGGGNRLYAYKRSRDGVNWSDREVIFHTDTSSADTSNRTLSPSWYKHGDGVWACIDVLWPSPQAVNWPYEVENQSQVFKRTSPVLSGKMDATGYGEYDPKTQIINYLNRDEFKGLTPWHIDEVKIGALHLQLINTGYIGNDSGRGLQLAWSVDGWNYHLLPAFDISGEAYYRSCLVPISITDNSITLLAYIGTVDGNVALEEITLEIN
Physico‐chemical
properties
protein length:598 AA
molecular weight: 66660,79790 Da
isoelectric point:4,70049
aromaticity:0,11204
hydropathy:-0,30953

Domains

Domains [InterPro]
DC_2149
ATT
3–110
DC_2149 IPR023296
IPR023296
STR
295–455
IPR023296
QJT70755.1
1 598
Architecture
ATT
STR
ATT 3-110 | STR 278-471 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJT70755.1
1 598
Domain Start End Length (AA) Confidence
N-terminal 1 412 412 0,6736
Central domain 413 587 176 0,4218
C-terminal 588 598 10 0,6159
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-412
Central
413-587
C-terminal
588-598

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage HY01
[NCBI] 		2736205 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio campbellii HY01
[NCBI] 		410291 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio campbellii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJT70755.1 [NCBI]
Genbank nucleotide accession
MT366580.1 [NCBI]
CDS location
range 12947 -> 14743
strand +
CDS
ATGACAGACCGCAATAACTTTTTTGAGCTAACTGAAAAGTTTAAGCAAAATATCGATTGGTTAAATCTAGTTCTGTTAGGGGGAGAAAATGACAGTGCCTTTATTAACGGCGTTGAAAAACCATCGATAGACAAAAGATTTAATGATCGTTTTTCAGAGCTAAAGGCGATGGTGAAAGGACGCCGAGCCTTTGAAACTTTGTCTGACTTATTAGCTTCAGGATTACCGCCAGAAGATACTCTTCTTGCTGAAGTTTGGAAAGATCCAAGCAAGATAAATAATGGTTTGTATGGTTGGACTGGAAGTGAGTGGGAAAAGTCGCCTTATGACGATGTCAATGAGCTTACTAAACATGTCGATTCTCTGATTGAAATGGCGGAAAGCAGTGATGTATTGCAAGCATTTGTTGACTCTGCAGGAAGGATGTATGCAGCTTTTAACCGCTTAGGTGAGCTTGAAGCTTTACTTTCTAACTCCGCGAAAGAGGCTGCTAATTACTTAAATTTCGTTCAAGATGAAAAAATTGCATTTGGCATCACCGATATTAATGACAGGCTTGTTTTTGGGGTGACTCATAGTGGTGAGGTCATACCATCTCCAAATTTAGCTAATGTTAAAGGTTACGCTTTCTTAGTTGTTGACCCAGATGACAAAATCATATTGGGAGTGACAGATAAGGGCGAACTGAAAAGTTTTGGTTCAGAGGATAGCGCCCCTGTCATTCCTGAGGTGGATAAAAATTCGATAGCTTTCTCTTTAGAGGTAGGCACTTTTCCTTTGCTGCCAGGCAAAATAATATCTGGTTATCATCGAGCATTGATAGAACCAAAACTATCCCTTCCATGTCAAGCCGTTGGTCGCTCAACAGACCCTGTTTTGAATCTCACTGATAATGGATTTTGCCACCCCAAAGTAGTTTACAAACCAGGAGGATGGAATGGGTTTCAATATTGGATGCTAATGACTCCGTATTTTGGTGTCGTAGGAACACATTCTCAATACGAGAACCCAACCATTCTTTGCAGCAACGATGGAGTAAAATGGAAGGAGCCTGATGGTCTCGTCAATCCTATCGATGTCCCAAACGATGAAGATTCTAGCTACTGGTCAGACACACACTTGGTACTTGGGGATGATGGTTTTTTATATGCATTTTATCGTGGGAACCATTTCGGGGGTGGTAATCGCCTCTATGCATACAAAAGAAGCCGAGACGGAGTAAATTGGTCAGATAGAGAAGTAATTTTCCATACTGATACATCTTCAGCAGACACTTCCAACAGAACGCTCAGTCCTTCTTGGTACAAGCATGGAGATGGGGTTTGGGCATGTATTGATGTTCTTTGGCCGTCTCCTCAAGCGGTTAATTGGCCATATGAAGTCGAAAATCAATCTCAGGTTTTTAAACGAACAAGCCCCGTTTTGTCTGGAAAGATGGATGCGACTGGTTATGGTGAATATGATCCAAAAACACAAATTATAAATTATCTCAATCGAGATGAGTTTAAAGGTTTAACGCCTTGGCATATTGATGAAGTTAAAATCGGTGCTCTTCATCTTCAGCTTATTAACACCGGGTACATCGGTAATGATAGTGGACGAGGCTTACAGTTGGCGTGGTCAGTTGACGGATGGAATTACCACTTACTTCCTGCCTTCGATATTTCGGGGGAAGCGTACTACCGTTCTTGCTTGGTGCCCATATCAATCACCGATAACTCAATCACTCTTTTAGCTTACATCGGAACAGTCGATGGCAATGTTGCACTTGAAGAAATTACCCTGGAGATAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0f81893abe13fa756ec7e448613e518daf2ff6ca3eb43b570aff5c49c6f0458
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7083
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A lysogenic phage of Vibrio campbellii HY01 Nuidate,T., Kuaphiriyakul,A., Surachat,K. and Mittraparp-Arthorn,P. 2021-02-15 — GenBank