Protein

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Genbank accession
YP_009009380.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MDLIKYDMADIWASAGDVVAPDSAKIAQGWGVEVVPRQWWNWFENRQDNNLAYMLQKGFPEWDATTEYIINKSYVQRSGIVYKATATSTNSDPIALLSWVKAFPESSNSLEAIRTLTPAADRVPYYTGADTAALMTVTAFARTLLDDPNVTTMRSTLGAQATHPNLTTLSTVTAAANALPYFTGTNSAATTTLTSFGRSLIDDADAVAARTTLGLTSAAITQLQANATERDIAKIMRVGAFGLGSFLDLRTHIYATGVPSDCYSAGTVFGFVNGGVGGLAIPGLSGTQYGVLQVNGQYSDASGLTAMSRVFIGPSGRTFTQTASSASAWGTWVESWTTGNLTKTTSNRDTTAGSMLKVGDFGLGAGVGLTTDDLNTVIDSGFYRLSTATTNYPHANAGFGQMIVCRGQDTISQMVFSYTGPRIWTRSGNPTNVGGVGVWTPWVELYHTGNTSQIVSDVTAGIQPQLDAKVNKAGDVMTGQLRVPNIVYTPLSGQGGTAYFLANGSTAPGGTDANITVDTPTAGNNGGRMVVNAGRFYMNCPTTTIGVASFQSDINTSGNVSAVNLNASGTITGAYITSTGNVNAAGTFTGSQVSVSGGVTAANGSGAVTISAGVVSIKSTSAGANAHVWFYDNVGNTRGIIYAQQSNTITLQAGGAVCANFSPSGGASFNLTSTSGIENNGRVRSLKNGVPVNGSMYANCHYMAETADGTPPAYSWHRGGSYALAVWLTNGNELQMMGSDGVSREIVNNSNLPAWNNSLYANGNQNIGSYAFARNGGGTVGFGGAQSGSVLSPGSTGANAGALSGTWICLGYAGGGNHTLWIRTS
Physico‐chemical
properties
protein length:825 AA
molecular weight: 85548,84360 Da
isoelectric point:5,93089
aromaticity:0,08848
hydropathy:-0,06533

Domains

Domains [InterPro]
DC_2128
STR
1–245
DC_2128 DC_1143 DC_1924
cd19958
STR
365–446
cd19958
YP_009009380.1
1 825
Architecture
STR
STR
RBD
STR 1-245 | STR 334-454 | RBD 608-825
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009009380.1
1 825
Domain Start End Length (AA) Confidence
N-terminal 1 506 506 0,4073
Central domain 507 705 200 0,3278
C-terminal 706 825 119 0,9600
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-506
Central
507-705
C-terminal
706-825

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa374
[NCBI] 		1458843 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus Psa374
Host Pseudomonas syringae pv. actinidiae ICMP 18800
[NCBI] 		1104681 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009009380.1 [NCBI]
Genbank nucleotide accession
NC_023601.2 [NCBI]
CDS location
range 52176 -> 54653
strand +
CDS
ATGGATCTGATTAAATATGACATGGCGGATATCTGGGCCTCTGCGGGTGACGTAGTTGCACCAGACTCTGCTAAGATTGCACAAGGTTGGGGTGTCGAAGTTGTTCCACGTCAATGGTGGAACTGGTTTGAAAACCGTCAAGACAACAACCTTGCTTACATGCTTCAAAAGGGTTTCCCAGAATGGGACGCCACAACTGAATACATCATCAACAAGAGTTATGTTCAACGTAGTGGTATTGTCTACAAGGCAACTGCAACAAGCACAAACTCTGACCCAATTGCATTGCTCTCTTGGGTAAAGGCTTTCCCAGAATCGTCTAACAGCCTTGAAGCTATTCGTACACTGACTCCTGCCGCTGACCGTGTTCCATATTACACTGGTGCTGACACCGCTGCTCTGATGACTGTTACAGCCTTTGCTCGTACACTTCTGGACGACCCCAATGTAACAACAATGCGTTCCACTTTGGGCGCTCAAGCTACTCACCCTAACTTGACAACTCTGTCCACTGTGACGGCTGCTGCTAACGCCCTGCCATACTTCACAGGAACAAACTCTGCTGCTACGACAACACTTACATCGTTCGGTCGTTCTCTGATTGACGACGCTGACGCTGTTGCTGCACGTACAACACTTGGACTAACATCTGCTGCAATCACTCAGCTACAGGCTAACGCAACTGAGCGTGATATCGCCAAAATCATGCGTGTTGGTGCTTTCGGTCTGGGTAGTTTCCTTGACCTGCGTACACACATCTACGCAACTGGTGTTCCAAGTGATTGCTACTCTGCTGGTACAGTCTTCGGATTTGTAAACGGTGGTGTTGGTGGCTTGGCTATTCCGGGGCTATCTGGTACTCAATACGGTGTCCTGCAAGTTAACGGACAATACAGCGATGCTTCTGGCCTTACCGCTATGTCTCGCGTATTCATCGGGCCAAGTGGACGTACTTTCACTCAAACTGCTTCCTCTGCTTCGGCTTGGGGCACATGGGTTGAATCTTGGACTACAGGCAACCTAACAAAGACAACAAGCAACCGTGACACAACAGCAGGCTCTATGCTGAAAGTTGGTGACTTCGGTCTTGGTGCTGGTGTTGGTTTGACAACAGACGACCTTAACACTGTAATTGACTCCGGCTTCTATCGCCTCTCCACTGCCACTACTAACTACCCGCATGCAAACGCTGGCTTCGGTCAGATGATTGTGTGTCGCGGACAAGATACAATCTCTCAGATGGTATTCAGCTATACTGGCCCGCGTATTTGGACTCGCTCTGGCAACCCAACTAACGTTGGTGGTGTTGGTGTTTGGACTCCGTGGGTTGAACTGTACCACACTGGTAACACTTCTCAGATCGTTTCTGACGTAACTGCTGGTATCCAACCACAATTGGACGCCAAAGTTAACAAAGCTGGCGATGTAATGACTGGTCAGTTGAGAGTTCCAAACATTGTTTACACTCCATTGTCTGGACAAGGCGGTACTGCCTACTTCCTAGCGAACGGCTCTACTGCTCCGGGTGGTACTGACGCAAACATCACAGTGGACACACCTACTGCCGGTAACAACGGTGGACGTATGGTGGTCAACGCTGGCAGGTTCTATATGAACTGCCCTACCACTACAATTGGTGTCGCGTCCTTCCAGTCTGATATCAACACATCTGGTAACGTGTCGGCTGTTAACCTTAATGCCTCTGGCACAATTACTGGTGCGTATATTACCTCTACAGGTAACGTAAACGCAGCCGGCACTTTCACTGGTTCTCAAGTCAGCGTCTCTGGCGGTGTTACAGCAGCTAATGGATCTGGTGCTGTTACAATTAGTGCTGGTGTTGTCTCTATCAAGTCTACCTCTGCTGGTGCTAACGCCCACGTTTGGTTCTACGACAACGTAGGTAACACGCGTGGTATCATCTACGCTCAGCAGTCCAACACTATCACCCTTCAAGCTGGTGGTGCGGTTTGTGCGAACTTCAGTCCTAGTGGTGGTGCAAGTTTCAACCTGACAAGCACATCTGGTATTGAAAACAACGGACGTGTACGTTCTCTAAAGAACGGAGTCCCAGTTAACGGCAGCATGTACGCAAACTGCCACTACATGGCTGAAACCGCTGACGGTACACCACCTGCCTACTCTTGGCACCGTGGTGGTAGCTACGCCCTAGCGGTATGGCTGACTAACGGCAACGAATTGCAGATGATGGGTTCTGACGGTGTAAGTCGTGAGATTGTTAACAACTCCAACCTACCGGCTTGGAACAACTCTCTGTACGCCAACGGCAACCAAAACATTGGTAGCTACGCCTTCGCCCGTAACGGCGGCGGTACAGTTGGATTCGGTGGTGCTCAGTCTGGTAGCGTATTGTCTCCGGGTTCCACAGGTGCAAACGCTGGTGCTCTTTCTGGTACTTGGATTTGCCTTGGATACGCTGGTGGCGGCAACCACACACTGTGGATCAGAACTTCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
70966b020c06bb7e0216ffc5a689c2c8b0d3981244ff45172c2b4890cf15943d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank